Basic Information

Insect: Xanthorhoe designata
Gene Symbol: -
Assembly: GCA_963582015.1
Location: OY757059.1:1114206-1118078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.3e-05 0.0023 18.8 2.7 1 23 147 169 147 169 0.98

2 13 0.58 40 5.5 2.0 1 23 175 198 175 198 0.92

3 13 6.8e-05 0.0047 17.9 0.1 1 23 204 226 204 226 0.98

4 13 3.2e-06 0.00022 22.0 2.1 1 23 231 253 231 253 0.99

5 13 7.7e-06 0.00054 20.9 3.6 1 23 259 281 259 281 0.99

6 13 2.1e-06 0.00015 22.6 0.9 1 23 287 310 287 310 0.95

7 13 8.4e-06 0.00059 20.7 3.0 1 23 316 338 316 338 0.97

8 13 1.3e-05 0.0009 20.2 0.9 1 23 344 366 344 366 0.98

9 13 3.6e-05 0.0025 18.7 2.9 1 23 372 394 372 394 0.99

10 13 1.4e-07 9.6e-06 26.4 0.7 1 23 400 422 400 422 0.98

11 13 3e-07 2.1e-05 25.3 1.6 1 23 428 450 428 450 0.98

12 13 0.14 10 7.4 3.0 1 23 456 475 456 475 0.94

13 13 5.5e-06 0.00038 21.3 0.6 1 23 481 503 481 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.3e-05	0.0023	18.8	2.7	1	23	147	169	147	169	0.98
2	13	0.58	40	5.5	2.0	1	23	175	198	175	198	0.92
3	13	6.8e-05	0.0047	17.9	0.1	1	23	204	226	204	226	0.98
4	13	3.2e-06	0.00022	22.0	2.1	1	23	231	253	231	253	0.99
5	13	7.7e-06	0.00054	20.9	3.6	1	23	259	281	259	281	0.99
6	13	2.1e-06	0.00015	22.6	0.9	1	23	287	310	287	310	0.95
7	13	8.4e-06	0.00059	20.7	3.0	1	23	316	338	316	338	0.97
8	13	1.3e-05	0.0009	20.2	0.9	1	23	344	366	344	366	0.98
9	13	3.6e-05	0.0025	18.7	2.9	1	23	372	394	372	394	0.99
10	13	1.4e-07	9.6e-06	26.4	0.7	1	23	400	422	400	422	0.98
11	13	3e-07	2.1e-05	25.3	1.6	1	23	428	450	428	450	0.98
12	13	0.14	10	7.4	3.0	1	23	456	475	456	475	0.94
13	13	5.5e-06	0.00038	21.3	0.6	1	23	481	503	481	503	0.98

Sequence Information

Coding Sequence: ATGTCCGAGACGTGGATAACAGAAGGCTTATGCCGTTGTTGTCACTCAAAAGGCCATTTTAAAAGCCTAGGGGGTTATTTCACTGACGAGAAAGTAGGAACTTACCTGGTGTTTCTGCATGAAACTTTCGGCATTGTCTTAGCACAGTCCCCGAATGACTACTCCACAATCTGTGGTATCTGTGAAGCCAGGCTGAGAGATGCCGCTCTCTTCCGAAGACAAGTTGTGGAATGTGAGGAACGATTTAACAAAGGCATAGATAATATTGTAAAGGATGTCAAAGTAGAGATTGATCAGCGTATAGAAGGGTGCTCCGATATAGATGACCAGCCACTGAGTAGTTTAAAATCTTCCGTTGAACAGAACTGCGTTGAAGAGGCCTGGCAAGATTATAATGATGaagCGGATTCTAAACCtatcaagaaaaaaactaaaaaatatcacTGCAGCTACTGCGAGAAACAATTTACATATAACGGCTCATTGGAAATGCATTTAAAGATACACACAGGGGAAAAGTCATATATATGTCTTTTATGCGCGGATACTTTTCACACAAACAAAGATTTGACCAAGCATTTTGCTTCAAAGCACAACGATGGATCTAAATTCCCTTGCACTATTTGCCCTAAGGTTTTGGACAAGCCTAAGCTACTAAAAAACCACTTAAACATACATTTTGAGAAGAAATTCAAATGCTCCGAATGCCAAAAAGAATTTCAACGTAAAAAAGGATTAAGAGAACACATGAAAGTGCACACAGGAGAGAGAAATTACCAATGTGATGTCTGTCAGAAGTCATTTGGGCACAATCAAACCTTAAAATCCCATATGTACACCCACACAGGTGAAAAGCCATATATATGTGATGTGTGTGGCCAGAGATTTCCACAGCGAACTCATTTAAAAAGACATATATATATCATACACAATGAGATCAAAGCGCATTCGTGTAATATATGTAAAAAGAAGTTTTCGAGCAAAAGTTACTTAGCGATTCATGAAAGACTACACACGGGCGAGAAACCATTTTCGTGCGAAGTGTGTAAGAAAGAGTTCACGGCTTATACCACTTTGAAAGTACATATGAGAGTACATACAGGTATCAAACCTTACTCCTGCAGTTTTTGCGAACGACAATTTTCCCAAATGTCTTCTTTTAAATTACATATACGAACACACACAGGGGAAAAGCCATATGCCTGTAAAGTTTGTCGAAAATCATTTTCTGATAACGGCTATTTGAAAATCCATATGAGAGTACATTCTGGCGAAAAACCATTTATATGTGATATATGTAAACGCAGTTTTAGAGAGACAGGGCAGCTAAAAAGACATATGCGGACTCATACAGGCTTAAAGGCGTATACatgtaaaatatgtaataaacaAATAGGTAACTTGTCGAAACATATGAAGGTGCATAGTGAGGATAAGGCATATAATTGTGGAGTTTGTAATAAGCAGTTCACTTTAAATGGAAATTTGAAAATACATATGAAATTACATGCTGAGTag
Protein Sequence: MSETWITEGLCRCCHSKGHFKSLGGYFTDEKVGTYLVFLHETFGIVLAQSPNDYSTICGICEARLRDAALFRRQVVECEERFNKGIDNIVKDVKVEIDQRIEGCSDIDDQPLSSLKSSVEQNCVEEAWQDYNDEADSKPIKKKTKKYHCSYCEKQFTYNGSLEMHLKIHTGEKSYICLLCADTFHTNKDLTKHFASKHNDGSKFPCTICPKVLDKPKLLKNHLNIHFEKKFKCSECQKEFQRKKGLREHMKVHTGERNYQCDVCQKSFGHNQTLKSHMYTHTGEKPYICDVCGQRFPQRTHLKRHIYIIHNEIKAHSCNICKKKFSSKSYLAIHERLHTGEKPFSCEVCKKEFTAYTTLKVHMRVHTGIKPYSCSFCERQFSQMSSFKLHIRTHTGEKPYACKVCRKSFSDNGYLKIHMRVHSGEKPFICDICKRSFRETGQLKRHMRTHTGLKAYTCKICNKQIGNLSKHMKVHSEDKAYNCGVCNKQFTLNGNLKIHMKLHAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00267406;
90% Identity: -
80% Identity: -