Basic Information

Insect: Xanthorhoe designata
Gene Symbol: F52C9.6
Assembly: GCA_963582015.1
Location: OY757057.1:478322-484382[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0031 0.21 12.7 1.6 2 22 97 117 97 117 0.94

2 13 5e-05 0.0035 18.3 3.8 2 23 136 157 135 157 0.96

3 13 2.7e-07 1.9e-05 25.4 0.5 1 23 164 186 164 186 0.96

4 13 2.3e-05 0.0016 19.4 2.6 2 23 192 213 192 213 0.97

5 13 0.00029 0.021 15.9 0.2 1 19 219 237 219 239 0.96

6 13 3.7e-05 0.0026 18.7 1.9 1 23 521 543 521 543 0.97

7 13 0.00061 0.043 14.9 0.1 1 23 548 570 548 570 0.97

8 13 4.9e-05 0.0034 18.3 2.9 1 23 576 598 576 598 0.98

9 13 0.00036 0.025 15.6 1.6 1 23 604 626 604 626 0.95

10 13 5.4e-08 3.8e-06 27.6 0.5 1 23 632 654 632 654 0.98

11 13 2e-06 0.00014 22.7 0.6 1 23 660 682 660 682 0.96

12 13 7.9e-06 0.00055 20.8 0.3 1 23 688 710 688 710 0.99

13 13 2.3e-06 0.00016 22.5 3.6 3 23 719 740 718 740 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0031	0.21	12.7	1.6	2	22	97	117	97	117	0.94
2	13	5e-05	0.0035	18.3	3.8	2	23	136	157	135	157	0.96
3	13	2.7e-07	1.9e-05	25.4	0.5	1	23	164	186	164	186	0.96
4	13	2.3e-05	0.0016	19.4	2.6	2	23	192	213	192	213	0.97
5	13	0.00029	0.021	15.9	0.2	1	19	219	237	219	239	0.96
6	13	3.7e-05	0.0026	18.7	1.9	1	23	521	543	521	543	0.97
7	13	0.00061	0.043	14.9	0.1	1	23	548	570	548	570	0.97
8	13	4.9e-05	0.0034	18.3	2.9	1	23	576	598	576	598	0.98
9	13	0.00036	0.025	15.6	1.6	1	23	604	626	604	626	0.95
10	13	5.4e-08	3.8e-06	27.6	0.5	1	23	632	654	632	654	0.98
11	13	2e-06	0.00014	22.7	0.6	1	23	660	682	660	682	0.96
12	13	7.9e-06	0.00055	20.8	0.3	1	23	688	710	688	710	0.99
13	13	2.3e-06	0.00016	22.5	3.6	3	23	719	740	718	740	0.96

Sequence Information

Coding Sequence: ATGGCGCGCAAGTCAGCCAGTATACTCAGAGATATATTTGAAAAAGGATTTGAGGTGTCCCTAGATACGCTCATGAAACTCAACATACAATCAATATCTCCATTATCAGTCAGCAATGAGCGTTCCATGCACACTGTGTCAGTCAACTATGACACTGACATCAAGCCAGATGTGTCGGTCAAGCTTGAAGTTTCCGACAATGAGGATACTCATGTTGATAATGACTCGATAATAGAACCACCGGTCAAAGTTGAAGTATATGTAGCAGATGATCCAGATCTAATGAACAGCTGTGACACATGCAGTAAAAGCTTCAGCAGCACCAAGAAACTCGTCTCTCATTATAGAAAAAACCAAAAATGCCGACCccaagacaaaaataaaagtaaaccgCCCGAAGAGTTGTCTTGTGACACTTGTAACAAAaagtttaaatacaaatacaactatGAGAGGCACAAGAGACTCCACGCTGCCGGGGCGAAGCCCTACACTTGTGATGTGTGTAATAAGACATTTGCAAGGAATAGCAATTTGAAACAACATGTTGTGATACATTCTTTGGCGAAGCCATCTTGTTCAATTTGCAATATATCTTTTACTTTGAAGAGGCATCTGAAGGAGCACATGAGGATACACGCCGGGAAGAAGTCGTATCCGTGCGATCAGTGTGATAAAACATTCACAAAGAATGTGTATCTTGAGGAACACAGCGCACTAGAAAACCAGgaaatagataaattatataTAGAATTAATTAAAAGCATTTACAACAAGAGCACTGCAAATTTAAAACTTACAACATATGGACCATCTTTCAATATTGACAAGGGTGTCAAGCAGGGTGACCCACTCTCTCCCAAACTTTTTACGAGCACTCTAGAAGAGATTTTTAGGAAACTGGCTTCTTCTTGGGTTCAGAAAGGTATTTTAGTTGGACAAAAGAGACTCACAAATCTTCGTTTCGCTGACGATATAGTTCTCTTTGCCCCATCAGCTCAAGAACTACAATCAATGCTCCAAGACCTGAGCACAGCAAGCCTTGAAGTTGGATTAGAaatgaatcggttaaaaacacAAATATTGACCAACAGCACCAAACGCAAGATCGAGGTGGACGGTCAAGATTTGcactatgtcgatgagtacacctacttgggccagttagctagcttcgaaaacaggcaggacaaagagATCGACCGCCGTGTCGAGAAcgcctggaagagctactggtccatgaaagCGCACATGAAGGGCAACCTTCCTCTGTCACTtaagcgcaaactcatcgacatgtgtattctgcccgtcCTCACTTATGGTGCACAAACGTGGTCCTTAACCGATTCACAaaaatccaaactcaaggtttgccaacgGGCAATGGAACGTAGCGTGCTTGGAGTCAAGCGAACTGACAAGATTCGCAATACCACGCTACGTTCAAAAACAGGTATTGCCGATGTAGGCAGGAAGTCAGCTAGgctgaaatgggattgggcaggccacgtAAGGAGAATGCACCCTGAGAGCAAAATACACACAGGGGAGCGGCCGTTCGCGTGCGAGCAGTGCGACAAGGCGTTCTACCACAGAAAGTTGTTAAAAGCGCACAGCAGAATCCACGGAGGGAAGACATACGCTTGTGACAAATGCGACAAGGCATTCCCCTTGAGGATCCGACTTGTGAGGCACATGGTGATGCACGCCCCGGACAAACCTTTCACGTGCGATAGATGCGCGAAGACTTTTACTACGATCAGCAATCTCCACCAACATCTGCTCACGCACTCGGGGGCGAAGCCCCACGCCTGCGGTAGTTGTGAGAAGACGTTTGCGAGGAAGCAAGAGCTGAAGATGCATTCTAGGGTGCACACGGGGGAGAAGCCCTACGCCTGCGGCGACTGCGGAAAGACATTCTCACAGCGGAGCACCCTCAATGTACATCGCAGGATACACAGCGGCGAGCGTCCGTACGCGTGTGAGATCTGCGGCAAGACCTTCGGGGACAAGTACACGTTCCGCAAACACATGGTCCTGCACAGCGGAGCCCGGCCCTACGTCTGTCCGCAGTGCGGGAAcgcttatagCTCCAGTTCAAGTCTGTACGTGCACCGGCGCAGCCACGGCGCGCCTGCGCGGCCCGTCGCCTGTCAGACCTGCAACAAGACATTCACTAACAACAGCCATCTTAAACGACACGTCAGGAATATACATATGCGCGCGCAAGTACGGCTAAAAGAGGACTATCCGACAgtttcataa
Protein Sequence: MARKSASILRDIFEKGFEVSLDTLMKLNIQSISPLSVSNERSMHTVSVNYDTDIKPDVSVKLEVSDNEDTHVDNDSIIEPPVKVEVYVADDPDLMNSCDTCSKSFSSTKKLVSHYRKNQKCRPQDKNKSKPPEELSCDTCNKKFKYKYNYERHKRLHAAGAKPYTCDVCNKTFARNSNLKQHVVIHSLAKPSCSICNISFTLKRHLKEHMRIHAGKKSYPCDQCDKTFTKNVYLEEHSALENQEIDKLYIELIKSIYNKSTANLKLTTYGPSFNIDKGVKQGDPLSPKLFTSTLEEIFRKLASSWVQKGILVGQKRLTNLRFADDIVLFAPSAQELQSMLQDLSTASLEVGLEMNRLKTQILTNSTKRKIEVDGQDLHYVDEYTYLGQLASFENRQDKEIDRRVENAWKSYWSMKAHMKGNLPLSLKRKLIDMCILPVLTYGAQTWSLTDSQKSKLKVCQRAMERSVLGVKRTDKIRNTTLRSKTGIADVGRKSARLKWDWAGHVRRMHPESKIHTGERPFACEQCDKAFYHRKLLKAHSRIHGGKTYACDKCDKAFPLRIRLVRHMVMHAPDKPFTCDRCAKTFTTISNLHQHLLTHSGAKPHACGSCEKTFARKQELKMHSRVHTGEKPYACGDCGKTFSQRSTLNVHRRIHSGERPYACEICGKTFGDKYTFRKHMVLHSGARPYVCPQCGNAYSSSSSLYVHRRSHGAPARPVACQTCNKTFTNNSHLKRHVRNIHMRAQVRLKEDYPTVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -