Xdes011950.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757040.1:950004-950608[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-10 5.8e-07 29.7 0.1 2 39 10 47 9 50 0.93 2 2 9 7.2e+03 -2.6 0.0 30 39 135 144 135 147 0.67
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGGGCATTGTGGTCACAAGATGACCTGGTCTCAGCTGTTCGCGCAGTTCAGAGAGGAATTTTGAGTACATATGCGGCTGCGGAAATATACAGGATTCCAAGAAGAACCATCAGAAACCATGTCGAGAGTGGTGTTGTGCAGACCCCAAGTCAACCAAACGCAAAACGCAGCTATTATCGCCAAATTTATGGAACTTCTTCAAGTGATTCTGAAGACGATGTGCCTCTTACCCAATTAAAATCTGGGTTTCATGATCTCATGCCCACACCTGCTAAAGTTCAAGAAAAAACACCCACTGTCCGACGCAAGGCTATTAATTACCGAGATACTCCAGTGACCAAAGATCTTTTTGACAAATTCAATGAAGGCAAGAAAAACAATGCAGGGAAGAAAAGTACAatacagaaaaagaaaaatgaggGAAAGAAAAGGGACCcagctaaattaaaaaattaa
- Protein Sequence
- MPPKRALWSQDDLVSAVRAVQRGILSTYAAAEIYRIPRRTIRNHVESGVVQTPSQPNAKRSYYRQIYGTSSSDSEDDVPLTQLKSGFHDLMPTPAKVQEKTPTVRRKAINYRDTPVTKDLFDKFNEGKKNNAGKKSTIQKKKNEGKKRDPAKLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -