Xdes002546.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757030.1:13762089-13762412[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 1.4e+03 -0.4 0.0 29 34 3 8 3 10 0.87 2 2 5.5e-10 4.4e-07 30.1 0.1 2 40 10 48 9 52 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGGACATTGTGGTCACAAGATGACCTGGTCTCAGCTGTTCGCGCAGTTCAGAGAGGAATTTTGAGTACATATGCGGCTGCGGAAAGATACAGGATTCCAAGAAGAACCATCAGAAACCATGTCGAGAGTGGTGTTGTGGTGAAAAGCTTGGGTCGTAAGCCCGTATTGAATCCCGAACAGGAAGCTGATCCTGTAAAGAGGATAATCAGGTATGCGGAAATAAGTTTACCTGTCACACCAAGAATACTGCGTCGGTTGGTGTACAAATATTGCGAGcttaataacataaatttatggaacTTCTTCAAGTGA
- Protein Sequence
- MPPKRTLWSQDDLVSAVRAVQRGILSTYAAAERYRIPRRTIRNHVESGVVVKSLGRKPVLNPEQEADPVKRIIRYAEISLPVTPRILRRLVYKYCELNNINLWNFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528217;
- 90% Identity
- iTF_01528217;
- 80% Identity
- -