Xtog049901.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970818.1:6919588-6932937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00051 0.072 15.2 0.8 1 23 72 94 72 94 0.98 2 15 0.36 51 6.2 0.0 2 23 119 141 118 141 0.94 3 15 0.028 4 9.7 2.1 3 23 194 215 193 215 0.97 4 15 0.048 6.7 9.0 2.3 1 23 246 269 246 269 0.98 5 15 0.00018 0.025 16.6 0.5 2 23 276 298 275 298 0.96 6 15 0.11 15 7.8 0.8 2 23 305 326 305 326 0.96 7 15 0.00032 0.044 15.8 4.8 1 21 332 352 332 359 0.90 8 15 0.04 5.7 9.2 0.4 1 22 571 592 571 594 0.90 9 15 0.33 47 6.3 0.6 3 23 667 688 665 688 0.93 10 15 0.0059 0.83 11.8 1.4 3 23 694 715 693 715 0.96 11 15 8.2e-05 0.012 17.7 2.4 2 23 719 741 718 741 0.92 12 15 0.015 2.1 10.6 0.1 2 23 747 769 746 769 0.94 13 15 0.00057 0.08 15.0 1.7 1 23 776 799 776 799 0.96 14 15 0.046 6.4 9.0 5.6 2 23 806 827 805 827 0.93 15 15 0.0014 0.2 13.7 3.4 1 23 833 855 833 855 0.98
Sequence Information
- Coding Sequence
- ATGTGCATTGCAAGCACTGAGGAAACCCGACGTAAAACAGAATTAAAGCGAGAAGATATTCCAGATACAAAGCCTTTGCAGAGAGTAAATGATTCTGAAGTGAAAACTGCCAAATCATATGGTGTACTAGAGACCCAAAAGATTTTAAGAGAAAATGTCGCTCGAGTGCTTGAGACATCCACGCTAATGCCGTTCAAATGGCTCAAAAACTCATACAGATGCTTCTACTGTTACGAAATCTTCCAACAACCCAAAGATttaaaagaacaccaagaaatTCATAAAACAGAAGAAATTGCAAAGAAAATGAAATCGTTTTTAGATCCTGCAGTAAACGTGGATGTTTCGAGAATCTCATGCAAACTATGTCCGGAGAAAATTGACGATTTATATTCATTAGTTGATCATTTAATTATAACACATGATATAGAGTTTAATAAAGATATAGGCTTATGTATGAACCCttttaaacttaataatatcaatgtttCCTGTGCTATATGCGATGGAATCTACCAAACTTTTGGCCGGCTTCTATTCCACACAGATAGGTACCACAGAGGCTCCTCGAATGTTCTTTGTGATATTTGTGGGAGTCATTTCAAGACTACTCAACGATTAAAGGAACATATAGACACTAAACACGACCATAAAACAGTTAAATGTAGATTATGTGATGACAAAATGGCGCCAACGACTGTAAGAACTCACATGCAGAGAGTGCACGGGAAGAAATACAAGTGTTTAAATTGTACTGAAGTTTTTGGATCACATTACAAGCGGTCGTTACATATGATGACAGTGCACAAGAACAGGGAGACAATCAAATGCCCCCAATGTCCGTTAACATTTGTTTTCAGAAGCACTATGATGAGACATTTAAGAGAATCACATTTGCAAGAAAAGAATGCTACATGCGGTGTTTGTGGATGGAAATGCTTTGAAGGCAGCAGACTTCAAATACACATGCTGAAGCATAGCAATGAGAGGAACTTCAGCTGCAGCGTGTGCGGCAAggcttttaaaacaaaaaagaccTTAAAAAcgcattgtaaaaatatacatttaaagGTACACGAGACAAACCAATCAGGCAtcctaaaacaaataatgaagtTAAACCCAAATGGAGTACAGGACTTCGCTGTAAAGTCACTAAAGCGAGCCCTGCAGACTGGTACATATCCCTATGAGTGGAAAGTTTCTAGAGTTACACCCATCCCTAAAACTCTAAACAAGAGTTCCGTCGAAGAATACCGCCCTATCGCAATCCTATCTTCCCCAGCgaaagtttttgaaaacatCCTCCATAGTGCTATCTATGAGCAAATAAACAAGTATCTTTGTAATGAGCAGCACGGTTTCAGAAACAAAAGGTCAGTTGACACAAATCTCCTGACGCTGGTGGATTATATCTCGTCTAGTTTGGACTGCGGACGTCAGGTAGATGTACTTTACTTCGACTTCCGGAAGGCGTTTGATAGGGTTAACAATGACGTGCTGCTAATGAAGCTTAGCAAAATAGGGTTCTCACCATCTCTCCTCCGCTTCTTTGCAGACTACCTACGTGATCGACAGCAGTTTGTTAGGCTTGAACAATCATTGGAACCAAGACTTAATGAAAAGACACGTAAAGAACGACTCGCGACTATTCTGACAGTCATCATACACAACTCAACTATAGTCCCCTTTAGATGGCACAGAAGCAAATATATGTGCTTTTACTGCAAATCTGTGTTTGTCGAAAGCGCAGAGCTTAGAGAACACACGGATTTTGAACATAGAGCAATCAATACCCGGGAAGTCATTGTAAGGACGCTGTATACTGGAGGCAGGGCAAAGCTTGACATCTCAAATCTTTGGTGCACCAGCTGTGCGAGTCAATTCGATGATTTCCAAGAATATTTGGAGCATCTATCGGAAAATCATGACCTTAGCATAGACAAAGAAGCCTCCAATTCCTTTGACTGTTTCCATTTAGCAGATGATGGAATGTTTTGCGTTGAATGTGGACAGTATTTCCGATTCTTTGGACCTTTACTCAAACACACGTACAAATATCATATCGAACAGATTCTGTGCGAAATCTGCGGGCAAGGATTCTCTGAGAAGCATAACGTGCACAACCATGTTAAACTAATTCATGGCATCAAGTCCTGTAAGCATTGCAACGAGACTTTCCGGACGCAGTACGCGTTGAAGAATCACGTAGACAATGTACATCGGACTGACAAGCTTCAATGTCCGATGTGTCCAAAAATACTCGGGAATAGATACTTGAAGAAACGTCACATGGCCTTAGTCCACGACTGCAAAAGCGCGCAATTTGTCTGCGAATATTGTTCGAAGATTTTTAcgagaaataataaatatgtccAGCATAAGCTTAGAGTACATGATAAGGAGAAGAATTGTACGTGTGAAGTTTGTGGCCACAAGACTTTTAACGAGGACTGTCTGAAGAGACATATGGTGGTACATTATGATGTGCGACCTTTTAAATGCGGGATCTGCGTTAAGGCATTTAGACGGAAGAAGACGCTAGCGTGTCATCTGAAGACGCATAAAACTGATACAAGGCTGGATGTTGTTGTTGGAGGAATTTAA
- Protein Sequence
- MCIASTEETRRKTELKREDIPDTKPLQRVNDSEVKTAKSYGVLETQKILRENVARVLETSTLMPFKWLKNSYRCFYCYEIFQQPKDLKEHQEIHKTEEIAKKMKSFLDPAVNVDVSRISCKLCPEKIDDLYSLVDHLIITHDIEFNKDIGLCMNPFKLNNINVSCAICDGIYQTFGRLLFHTDRYHRGSSNVLCDICGSHFKTTQRLKEHIDTKHDHKTVKCRLCDDKMAPTTVRTHMQRVHGKKYKCLNCTEVFGSHYKRSLHMMTVHKNRETIKCPQCPLTFVFRSTMMRHLRESHLQEKNATCGVCGWKCFEGSRLQIHMLKHSNERNFSCSVCGKAFKTKKTLKTHCKNIHLKVHETNQSGILKQIMKLNPNGVQDFAVKSLKRALQTGTYPYEWKVSRVTPIPKTLNKSSVEEYRPIAILSSPAKVFENILHSAIYEQINKYLCNEQHGFRNKRSVDTNLLTLVDYISSSLDCGRQVDVLYFDFRKAFDRVNNDVLLMKLSKIGFSPSLLRFFADYLRDRQQFVRLEQSLEPRLNEKTRKERLATILTVIIHNSTIVPFRWHRSKYMCFYCKSVFVESAELREHTDFEHRAINTREVIVRTLYTGGRAKLDISNLWCTSCASQFDDFQEYLEHLSENHDLSIDKEASNSFDCFHLADDGMFCVECGQYFRFFGPLLKHTYKYHIEQILCEICGQGFSEKHNVHNHVKLIHGIKSCKHCNETFRTQYALKNHVDNVHRTDKLQCPMCPKILGNRYLKKRHMALVHDCKSAQFVCEYCSKIFTRNNKYVQHKLRVHDKEKNCTCEVCGHKTFNEDCLKRHMVVHYDVRPFKCGICVKAFRRKKTLACHLKTHKTDTRLDVVVGGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -