Xtog044774.2
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970813.1:17402901-17405510[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.28 39 6.5 1.2 2 23 203 225 202 225 0.95 2 18 0.0093 1.3 11.2 0.6 1 23 230 253 230 253 0.96 3 18 3.3e-05 0.0047 18.9 0.6 2 23 257 278 257 278 0.97 4 18 0.0018 0.25 13.4 0.3 2 21 284 303 283 304 0.92 5 18 8.2e-06 0.0012 20.8 0.1 2 23 320 342 319 342 0.96 6 18 0.0013 0.18 13.9 1.9 3 23 350 370 348 370 0.97 7 18 0.00017 0.024 16.7 2.5 1 23 376 398 376 398 0.98 8 18 4.4 6.2e+02 2.8 2.3 1 23 404 427 404 427 0.74 9 18 4.6e-05 0.0065 18.4 3.4 1 23 432 454 432 454 0.98 10 18 3.5 4.9e+02 3.1 1.0 2 23 553 575 552 575 0.94 11 18 0.034 4.8 9.4 1.1 1 23 580 603 580 603 0.91 12 18 7.9e-05 0.011 17.7 1.4 2 23 607 628 607 628 0.93 13 18 0.0016 0.22 13.6 1.3 2 21 634 653 633 654 0.93 14 18 1.5e-05 0.0021 19.9 0.1 2 23 670 692 669 692 0.95 15 18 0.31 44 6.4 1.1 2 23 699 720 698 720 0.95 16 18 9.2e-05 0.013 17.5 1.0 1 23 726 748 726 748 0.98 17 18 3.3 4.6e+02 3.2 2.1 1 23 754 776 754 777 0.93 18 18 0.42 59 6.0 2.6 2 23 783 802 782 802 0.95
Sequence Information
- Coding Sequence
- ATGCCAATTTTAAGTTATATACTTCATGATGTTTTGTCTGATAAGTCGGACTGTTGTTTCTTGTGCTTCAATACAATAAGCGAAATTGAAACTCCTTTTAATATTGAAGACGAAGTTTGTCTAGGCTTTGATAACGAAACGACTGaaatattgtatgaaataatACACACTGTGTTAGGAGATACGGTCTTGGACAGCATTTCTGCACATGATATGATTTGCCAGAAGTGTACAGGAACAGTTATAAATTGTTATAAGTTCATTCAACAATGTAGACAAAATATAGATCAGTTGCACTGTACAATAGATTCCCTACAGAAACATGCCCAAAATATAGATCCAGGAAACTATGATAACAAGGcattattttttgctttggACCCTAGTAACTATAATGTAGAATTGTATGATGATGAACACCGAAACATCAataatcaaactcaaacaaaTTCAAACTCCCAACAGTTTTATTTAGATGTTGAAGTGGAGTCAAACAACAGTCCTGATAATAATGACTGTGCTGTGAAAAGAAGAAAACAAAGTAGTATATTGCAATCTATTGAACTTGCTCATATAGTTCATGATAAAGATGACCTAAATAATCTAAAATGTAAAACGTGCTTGAAAATGTATCCCACAGTAATGAAAATGAAACAGCATTACTTAAGAGTGCATGCACCCAAAGATTTTAAATGCTCTCAGTGTCCAAGAAGTTTTGGGTCTTCATTAATTCTGAAACAGCATACAAAAGTCATTCACTGTACTGCGGTCTGCAGCCAATGCGGCAAAACATACGCCAACCTTTACTCACTAAAACTTCATGAAAGAAGACACAGCAAGTCATGCCTCATTTGTCAGACATGTGGTAAGGTTTATAAGGGAAAGCGGTCATTTAATAACCATATTGAGAAGCAGTTGTGTGAAAAGAAGAGAAAGTCAAATGCAGAAGCGAAGCTGTCCTGTGATTATTGTGGAAAAAAGTATGCACAAAAAGCGGCTTTAAGTGTTCATATCCGCATAGAACATGAAAATGGTAAAGCTATGATATGTGACTGGTGTGGTAAGAAATTTAGTTGTAAGAGCCGGTTAAATGATCATATTTTAACACATACTAAACAGAAGAATTTTGAATGTGAACACTGTGGAGGAAAGTTTGCAACAAAGACATCATTGCTGTATCATACTAGAAGGCATACGGGTGTTAAGCCATATAAATGTGAACATTGTGAATTGAAATTTTTGTCTACTTCCCGTCGCTCTGAACACGTGAAGCGACAACATACACAATCTATCTTTGAATGTGATATATGCCATGGTAAATTTAAGGataattcatatttaattaaacacaaGAGAAGACATTTTGATGTTAGAAGTAGATTATATTTTAACCCTCCAGCTTCAGTAACTTCAGTAGCTTCAGACACTAGTAACTATAATGTGAAATTGTATCATGGTAAACACCGAAACATCAATAATAAAACTCTAAGTAAGAAATACAAAGGTTCCCAACAATTTTATACTGATATTGAAGTGGAGTCAAACAACAGTCCTGATAAGAAAAACTGTGCTGTGAAAACAAGAAAACAAAGTAGTGTATTACAATCGATTGAACTTGCTCACATAGTTCATGATAAAGATGACCTAAATAATCTAAAATGTAAAACATGCTTGAAATTGTATCCAACAGTCACGAAGATAAAACAGCATTACTTAAGAGTGCATGCACCCAAGGATTTTAAATGCTCTCAGTGTCCAAGAAGTTTTGGGTCTTCATTAATTCTGAAACAGCATACAAAAGACAGTCACAGTACTGCAGTCTGCAGCCAATGCGGCAAAACATACAGCAATCTTCACTCATTAAGACGTCATGAAGAAGGACACAGCAAGTTACACCTCGTTTGTCACTCATGCGGTAAGGTTTATAAAGgaaagcattcattcaataaccATATTGAGAAGCAGTTGTGTGAAAAGATGAGAAAGTCAAATGCAGAAGCAAAGCTGTCCTGTGATTATTGTGGAAAAAAGTATGCACAAAAAGCTGCTTTAAGTGTTCACATCCGCTTAGAACATTTAAATGGTAAAGCTGTGACATGTGACTGGTGTGGTAAGAAATATGGTTGTATAAGCCGGTTAAAGgatcatattttaaaacatacaaaacaGAAGAATTTTGAATGTGAACAGTGTGGAGGAAAGTTTGTAACAAAGACATCTTTGCTGTATCATACAAGAACACATACTGGTGATAAGCCATATAAATGTGAACAATGTGAAGGGACATTTTTGTCTGCTTCCCGTCGCACTGAACATGTGAAGCGACACCATATAAGACCTAATTTAGAATGTGATATCTGCCATGGTAAATTTAAGGGTAGTTTAAGTCGACACAGGAGAAAACATTTTGATGTTAGAAGTAGATTATATTGTAACCCTCCATCTTCAGTTGTTAGATCATCAAATAATGAAAGTGTATGA
- Protein Sequence
- MPILSYILHDVLSDKSDCCFLCFNTISEIETPFNIEDEVCLGFDNETTEILYEIIHTVLGDTVLDSISAHDMICQKCTGTVINCYKFIQQCRQNIDQLHCTIDSLQKHAQNIDPGNYDNKALFFALDPSNYNVELYDDEHRNINNQTQTNSNSQQFYLDVEVESNNSPDNNDCAVKRRKQSSILQSIELAHIVHDKDDLNNLKCKTCLKMYPTVMKMKQHYLRVHAPKDFKCSQCPRSFGSSLILKQHTKVIHCTAVCSQCGKTYANLYSLKLHERRHSKSCLICQTCGKVYKGKRSFNNHIEKQLCEKKRKSNAEAKLSCDYCGKKYAQKAALSVHIRIEHENGKAMICDWCGKKFSCKSRLNDHILTHTKQKNFECEHCGGKFATKTSLLYHTRRHTGVKPYKCEHCELKFLSTSRRSEHVKRQHTQSIFECDICHGKFKDNSYLIKHKRRHFDVRSRLYFNPPASVTSVASDTSNYNVKLYHGKHRNINNKTLSKKYKGSQQFYTDIEVESNNSPDKKNCAVKTRKQSSVLQSIELAHIVHDKDDLNNLKCKTCLKLYPTVTKIKQHYLRVHAPKDFKCSQCPRSFGSSLILKQHTKDSHSTAVCSQCGKTYSNLHSLRRHEEGHSKLHLVCHSCGKVYKGKHSFNNHIEKQLCEKMRKSNAEAKLSCDYCGKKYAQKAALSVHIRLEHLNGKAVTCDWCGKKYGCISRLKDHILKHTKQKNFECEQCGGKFVTKTSLLYHTRTHTGDKPYKCEQCEGTFLSASRRTEHVKRHHIRPNLECDICHGKFKGSLSRHRRKHFDVRSRLYCNPPSSVVRSSNNESV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526340;
- 90% Identity
- -
- 80% Identity
- -