Xtog030612.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970803.1:19990114-19990737[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-10 2.5e-07 31.9 0.0 2 36 17 51 16 56 0.93 2 2 9 2.6e+03 -0.2 0.0 21 31 157 167 154 172 0.82
Sequence Information
- Coding Sequence
- ATGCCGCGAGTTTATAAGAAAAAAGGGACTGGAACGAGGGAGAAAAATGAAGACGCAATGGAAGCTGCTGTAAAGGAAGTTTTAGATAAATCTTTGTCCGTTAGGAAATCAGCAACGAAATACGGCGTCCAACCGTCGACTCTTCAAAGTCGCTTACTAAACTTCCGTAAAAAAGCTGCTGCCGAAAGGGAAGATGACATCCCAGCGCGTGTTTTTACTTTGAAGTTCTCGTCAAATCAAGTTTTCAGTGTCGAAGAAGAAATTGTTTTGCACAAGTATATCACGGACTGTTCGAAAATGCACTATGGGTTAACGATTGTACAGGTGAGAAAACTGGCATATGAATTAGCAAAAGCAAACCAACTTCATTATCCACCTAGCTGGGATAACAACAAAATGGCGGGAAAAGATTGGCTGGAAAGCTATCGCAGGCGGAATACAATTTTAAACTTGAGAAAATCTGAAAACAGTGCAGCTAGATCTTATGGATTCAACAAGACGGTCGTAAGTGATTTCTTCGGAAACCTAGAAAAGGTTTTGATTAAATATGAATTCAGTGCAGATCGGACTTTTAATTTTGATGAGTCGGGGATATCGACAGTGctgaacacgttttttttttaa
- Protein Sequence
- MPRVYKKKGTGTREKNEDAMEAAVKEVLDKSLSVRKSATKYGVQPSTLQSRLLNFRKKAAAEREDDIPARVFTLKFSSNQVFSVEEEIVLHKYITDCSKMHYGLTIVQVRKLAYELAKANQLHYPPSWDNNKMAGKDWLESYRRRNTILNLRKSENSAARSYGFNKTVVSDFFGNLEKVLIKYEFSADRTFNFDESGISTVLNTFFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -