Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0016 0.46 11.8 0.0 19 43 3 28 1 29 0.84

2 4 0.00052 0.15 13.4 0.0 13 35 55 77 52 86 0.85

3 4 0.00052 0.15 13.4 0.0 13 35 112 134 109 143 0.85

4 4 0.00052 0.15 13.4 0.0 13 35 169 191 166 200 0.85

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0016	0.46	11.8	19	43	3	28	1	29	0.84
2	4	0.00052	0.15	13.4	13	35	55	77	52	86	0.85
3	4	0.00052	0.15	13.4	13	35	112	134	109	143	0.85
4	4	0.00052	0.15	13.4	13	35	169	191	166	200	0.85

Coding Sequence: ATGAAAGTTTCCACTGCTAGCAAGAACTTTAATGTTCCCCGAACGACATTGCGAATAAACTTTTTGCTGACGCACCTTGAAACTTCTGGACATGCGGGACCTCAAGCAGGTCTAGGAATTGAAATCGAAAATGTACTTGTATCGTGGATAAAAGATTCTGCTCGTAATGGCATGAAAGTTTCCACTGCTAGCAAGAACTTTAATGTTCCCCGAACGACATTGCGACACAAACTTTTTGTTGATGCACCTGAAACTTCTGGACATGCGGGACCTCAAGCAGGTCTAGGAATTGAAATCGAAAATGAACTTGTATCGTGGATTAAAGATTCTGCTCGTAATGGCATGAAAGTTTCCACTGCTAGCAAGAACTTTAATGTTCCCCGAACGACATTGCGACACAAACTTTTTGTTGATGCACCTGAAACTTCTGGACATGCGGGACCTCAAGCAGGTCTAGGAATTGAAATCGAAAATGAACTTGTATCGTGGATTAAAGATTCTGCTCGTAATGGCATGAAAGTTTCCACTGCTAGCAAGAACTTTAATGTTCCCCGAACGACATTGCGACACAAACTTTTTGTTGATGCACCTGAAACTTCTGGACATGCGGGACCTCAAGCAGTTCTAGGAATTGAAATCGAAAATGAACTTGTATCGTAG
Protein Sequence: MKVSTASKNFNVPRTTLRINFLLTHLETSGHAGPQAGLGIEIENVLVSWIKDSARNGMKVSTASKNFNVPRTTLRHKLFVDAPETSGHAGPQAGLGIEIENELVSWIKDSARNGMKVSTASKNFNVPRTTLRHKLFVDAPETSGHAGPQAGLGIEIENELVSWIKDSARNGMKVSTASKNFNVPRTTLRHKLFVDAPETSGHAGPQAVLGIEIENELVS

Sequence clustering based on sequence similarity using MMseqs2