Xict007929.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421934.2:19536083-19539780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.68 72 5.3 1.7 8 23 33 48 32 48 0.93 2 20 0.013 1.4 10.7 1.1 2 23 60 81 59 81 0.96 3 20 0.0024 0.26 13.0 0.5 1 23 91 113 91 113 0.98 4 20 2.8 3e+02 3.4 7.3 1 23 142 164 142 164 0.94 5 20 0.0019 0.21 13.3 2.8 1 23 175 197 175 197 0.97 6 20 1e-05 0.0011 20.4 0.5 1 23 205 227 205 227 0.98 7 20 0.00039 0.042 15.5 0.2 2 23 247 269 246 269 0.97 8 20 0.63 67 5.4 0.3 1 23 287 309 287 309 0.90 9 20 0.007 0.75 11.5 3.4 1 23 316 338 316 338 0.97 10 20 0.0037 0.4 12.4 3.2 2 23 349 371 348 371 0.95 11 20 0.0089 0.95 11.2 0.2 2 23 394 415 393 415 0.95 12 20 8.6 9.2e+02 1.8 0.3 2 20 419 437 418 438 0.76 13 20 0.82 88 5.0 3.6 2 23 458 480 457 480 0.95 14 20 0.0035 0.37 12.5 0.2 2 23 496 517 495 517 0.95 15 20 2 2.2e+02 3.8 4.1 5 23 527 545 524 545 0.94 16 20 0.0086 0.92 11.3 0.8 2 23 556 578 555 578 0.95 17 20 0.12 13 7.7 3.3 2 23 595 613 595 613 0.90 18 20 0.49 53 5.7 1.9 2 21 617 636 616 637 0.93 19 20 0.29 31 6.5 0.9 2 23 686 707 685 707 0.93 20 20 0.0019 0.21 13.3 0.5 2 23 718 740 717 740 0.96
Sequence Information
- Coding Sequence
- ATGAtaacgctggatgacccgcacctgatccgtcagtcgttgtgccgaaacgttgacGGCTCGATCGAGCACCTGAAAAAGAGGGAGCATCCAAACACGTCCTTCAAGTTCCAGTGCCACTACAAGATCCACATGCGCGAGCACTACCGCGACACCAACCTCGACCCCAAGCACCTCACGTGCACCATCTGCGGGCGCCGCAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGACCTACCACAAGCAGACGCGATTCCAGAACAAAGACTACCAGTGCTCTATCTGCGAGAGAGTCTTCCAATACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTCATCAACACCATCGTAGGCGACGCCATGCCCAGCAACGCCGACAAAAGCGTCTTCGACGGCACGCACACCTGCCACCTCTGCGGCAAGATCTGCGATTCAGAAAACTCCCTCAAATGTCATCTCTCATGGCACACCTCCAAAACTTTCCTGTATGGCGCCCGCCACGAATGCACCATCTGCAAAGTGAAGTTCACGAATAAACGAAGACTAGAGCTTCACACCCGAGCTCACTTCGAAGACGATAACGGTCCCTACAAGTGCACCATTTGTGGCAAAGGGTACACCGACGAGGGCTACTACCAAAGACATGTGAAGGGACACAACTTTGACCATCAGTCCCACAAAAAGAGGATCGACAAAATCAGAAAGGATAAAGTTAAATGTCCAATATGTACGCGGTACTACCCTGACTTGGTGAAGCTGATCCGTCACTTGCGGCGCACGCACCCCGAGAGTAAGATGATCAAATCCGACCCAGACGCGCCGCCACCTCTCTACTATTCCTGTAAGTTGTGCGCCAAAGTATTTCTAGACGAGCGGAGACTGCAGTCCCACGAGGAAGCTCATTTAAGGAAGCCAGAGTTCTTTAAATGTAAGTTCTGTGGAAAGAAATACATTTCGCTAAAGAACCACCAGGCCCACATAAAGGGTCACTTGGCGCAGAAACACTACGACAACCCGCTGAAGTGTCCGCACTGTGACGAGAAGTTCGTGAAGGGTTACGGCCTGCACCACCACCTGCGCGACGCGCACAACGTGCTCGAGAACTGGATCGCGGAGCGCACGGAGCAGCCGCTCACCGGCCCACTGAAAGATCTGCAGTGCTCCATCTGTATGAAGGTCCTCGCCAGCAAAGGGAACTACGAGCGACACATTGACTACCACAACTCCTTGAGATGTAACTACTGCTTCGATTACTTTAGCTCTCTCAGGTTTCTAGAAGGACATCTAGCGTTCTCGTGCGAGAAGAAAAAGCTCTTAGGTGATACCGAAGTTTACCCTAAGAAAGTAAAATGCAACATTTGTTATAAAGCCTTCCATGTTCAAGTGAAACTGGACTGCCACTTGCGCACGCAGCACGGCGTCATAGTAGACAAGGAACAGAGAGCAGGCAAGCAAGAAATTGTCTGCGATTATTGCTTTAGAGTTTTCGAAAACGAGTATGCCCTAAGTACTCACAAGATTTACCATCGCACGGTTGGCTTCTACGGGTGTATTTACTGCAAAAAGAAGTTTAACACGTTGACTGTGTATCGAAAACACAAGAATCACCATATGGCGCAGCTCAATGTAGATAACCCGACGAAATGCGAACATTGTGACGAGACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTACACGGAGATGACAAGGAATGGTTCACAGAGCCCAAGGAGTCCATCGAGGAGACGTGCCCCATCTGCAACAAACGATTCTACAATCTTCACAAGCATTTGACTTACCACGAACAAAACAAGTGCAAGAAATGCAGCGAATATTTCTACTCTCGGGCGGACTTCGATAGTCATCTCTGCGCCATTGAAAGTGACGACGAAGGCACGGGATACGTGGGCAACGAGCAGGCGTTCCAGTACGAGGAGTGCCGGTTCTGCTTCAAACCTATCACCAAGAAGAGCACCAAGCGGCTGCACAACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGGTTCTGCTCACTTAAATTTAAAACTATGGACGCTTTTAACATACACGCATTCTCTCATCGAAGTAGAAAATACAACAAGAAACCGATAAAATGTCGGAAATGCGGCGAAAAGTTCGTTAAATACGGACCATTTATAAAGCATATGAAGTTAGTTCACAAATCTACGAAAAAGATTCACTACAGAGCGGTTGTGAAGCCTGATAAATGTGTCGTTTGTGGAGACGACTTCCCGAATCTTCACAACCACTACCGCGCTCATCTGCTGAACCAGTGTCAGAGTTGTCTCAAATACTTTACTTCGTACAAAGCGATCTCTGCGCACGCGTGCGACAAAGAGGACTCTGACCCGTCGAAGGTGTTCACAAGTGACGCTAACTTGAACGAGCTGATAAACACATACGTTCCTAAGGACGAGAAGGACGATGAGAAGTACTACGGCCACACGGACGACGAGGAAGAAGATGTTGAGCCACTAGTATTTGGCGAAGAAGAGGAGAGTCAGGAGAGTAAAGACATACCGATGCTCCAGTCGCCGATCATATCAGATGTTCTGTCGCTGTTCAAGACGGAGATGAATGGGATGGGCGAGGTGGATGGCGTGGTGGATAACATGGATGAAGTGGTCAATATAACTGATGATGACTCGGTGGATGTCGACGATTCCGTCATGCCAATTGTTGTCGTTATAGATGACGATTAG
- Protein Sequence
- MITLDDPHLIRQSLCRNVDGSIEHLKKREHPNTSFKFQCHYKIHMREHYRDTNLDPKHLTCTICGRRSKHLRAAQAHMTYHKQTRFQNKDYQCSICERVFQYRKVYLSHMAIHYKKGDSVINTIVGDAMPSNADKSVFDGTHTCHLCGKICDSENSLKCHLSWHTSKTFLYGARHECTICKVKFTNKRRLELHTRAHFEDDNGPYKCTICGKGYTDEGYYQRHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHQAHIKGHLAQKHYDNPLKCPHCDEKFVKGYGLHHHLRDAHNVLENWIAERTEQPLTGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGVIVDKEQRAGKQEIVCDYCFRVFENEYALSTHKIYHRTVGFYGCIYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEQNKCKKCSEYFYSRADFDSHLCAIESDDEGTGYVGNEQAFQYEECRFCFKPITKKSTKRLHNQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKLVHKSTKKIHYRAVVKPDKCVVCGDDFPNLHNHYRAHLLNQCQSCLKYFTSYKAISAHACDKEDSDPSKVFTSDANLNELINTYVPKDEKDDEKYYGHTDDEEEDVEPLVFGEEEESQESKDIPMLQSPIISDVLSLFKTEMNGMGEVDGVVDNMDEVVNITDDDSVDVDDSVMPIVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112012;
- 90% Identity
- iTF_00374610;
- 80% Identity
- -