Xict033356.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421957.2:2059136-2076382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 20 7.1 0.6 1 23 75 98 75 98 0.95 2 12 0.2 21 7.0 0.5 1 23 106 128 106 128 0.94 3 12 0.87 93 5.0 0.4 1 19 132 150 132 152 0.87 4 12 0.00036 0.038 15.6 0.9 1 20 161 180 161 182 0.94 5 12 0.0037 0.39 12.4 1.0 2 21 189 208 189 209 0.92 6 12 0.00022 0.023 16.3 0.6 2 23 225 246 224 246 0.93 7 12 0.00036 0.039 15.6 0.3 1 23 251 273 251 273 0.97 8 12 0.019 2 10.2 4.8 1 21 282 302 282 307 0.93 9 12 1.9e-05 0.002 19.6 2.3 1 23 315 338 315 338 0.93 10 12 0.0039 0.42 12.3 0.4 1 23 344 367 344 367 0.95 11 12 0.013 1.4 10.6 0.3 3 19 380 396 378 397 0.89 12 12 0.027 2.9 9.7 0.9 1 23 410 433 410 433 0.97
Sequence Information
- Coding Sequence
- ATGACACGCGTGATCTTCCACCGAGCCGGAAAAGTGGCTTCTTTTAAGCAGGTGGACTCCCCAAAACGCCAAAAGACTAAGAAGGACAAGAACCCCGACAAGAAGAGTAGGAAGCTAAAGAATCTCCCAGAAGAATTGGTAGAATTGTACACTATGAGTAAAGAAGACATGTGGGCTATCAGGATTGAGGATCTCAACAGCAAGGAGTTTCAGAAGCTGAAGTATAGGTGTGATGATTGCATCATTGCCTTCAACACGGAGAAGTTGATGCATGACCATCTAAACGGAAAACATCAACCAaagaGCGAAGACTGCCATCAATGCTCAATATGTCAGGCCTATTTCCTAACTAAAGACAACGTGGCCGCACACAAAGCATTACATCAACAAGGCTACAAATGTCGGGAGTGTGGCTTCAATACTACGTTGAAACGACGCATGTTGAAACATGTTGGGTGTCATGCGCCGAGTGGAGATGCTCATGTGTGTCAGACTTGTGGCAGTAGCTTTAGCACAAAATCAAAGCTAACATACCACCGAGGCGTGTGTTGTCAAGAAAGGCCACAATGTGACTGCTGTGGCAAAGTATTCGCCAACAAAATGACACTCAAGTACCACCTCAAAATCCTGCCACAGAATAAAGATGATAAGCCAAAAGAGAAGTTATTCATACCGTGCAAAGGATGTGATAAAGTGTTCCATTCTAAGAAGAGTTATAGAGCGCAtgcTGTAATCCACGATGGCCTAACCTACCCGTGCCCAATTTGCGGCAAACTGTTTCAATGGAAACGCAACCTCGCGCGACACTCGCGCAACCATCGCGAGCGACAGGCGGGCAACTTGCACGAGTGTCGCGCTTGCAGCAAGACTTTCGCAAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCGCAGGATACTTTCCCACATGAATGCAACTACTGCGGTAAGAAATTCGCTACAAAATGGTGTCTGACCGACCATATCGACTGGGATCACTTGAAGAAAATCAAATACCAGTGTAGCTTCTGTTTCAAGGCATTCAAAACAGCGAAAATTTTGGTAGCTCACGTCAATAATATACACGAGggaaagaaaaaagaagttGAGAGCGAACACCTTTGTGAAATATGCGGGAAATCGTACAGGACAGTAAAACGCCTAAAGGGCCACGTATGGGCGATGCACACAAAACGGTCAAGCAGCAAGATATACAAATGTAAGTTGTGTCCGGCGACATTCATGTGGCAGACTAGCATATACAAGCATATGAAGATGATGCACGATAACAACAAGAAGAGTAAGacACCTCGGGCCGTCCAACCAGTGAAGAAAGAAGAGCCCTACCCGGGAATCGATCTAGCGAACCGAATGCAGTACTTCCAACAAAACATTGGAGGCAACTTAAATATAGTTCACATACAACCTTTGGGAATGCCTCAGAATATTGTTTAG
- Protein Sequence
- MTRVIFHRAGKVASFKQVDSPKRQKTKKDKNPDKKSRKLKNLPEELVELYTMSKEDMWAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGCHAPSGDAHVCQTCGSSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHAVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEVESEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKTPRAVQPVKKEEPYPGIDLANRMQYFQQNIGGNLNIVHIQPLGMPQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01063169;
- 90% Identity
- iTF_01027700;
- 80% Identity
- -