Xict036839.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OY855862.1:7146911-7150698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00095 0.1 14.3 1.1 1 23 79 102 79 102 0.97 2 14 0.12 13 7.6 0.1 2 23 129 151 128 151 0.95 3 14 0.00093 0.1 14.3 1.4 2 23 174 195 173 195 0.97 4 14 0.00019 0.021 16.4 0.5 1 23 199 221 199 221 0.97 5 14 0.023 2.5 9.9 0.3 1 23 295 318 295 318 0.93 6 14 0.51 55 5.7 0.1 2 23 345 367 344 367 0.94 7 14 0.002 0.22 13.2 2.0 2 23 390 411 389 411 0.96 8 14 4 4.2e+02 2.9 0.9 1 14 415 428 415 437 0.85 9 14 0.038 4.1 9.2 4.5 1 23 442 465 442 465 0.96 10 14 0.38 41 6.1 0.7 2 14 473 485 472 495 0.80 11 14 8.9e-05 0.0095 17.5 1.3 2 23 503 525 502 525 0.96 12 14 0.00081 0.086 14.5 0.8 1 23 531 553 531 553 0.98 13 14 1.5e-05 0.0016 19.9 2.0 1 23 559 581 559 581 0.99 14 14 0.00014 0.015 16.9 4.3 1 23 587 610 587 610 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAACACCAGATTGCTTCAAAAATAGAGACAGCACATACAAAGTCAATGGTAGttggaaagaaaaatacaaacagaGGCATATTTCAATCAGAAACTGATGAagatggtaaaaaaattaagaaaaagagTCAGAAACAAAATGAAGAAGAATTGTTTAAACAACGTTATAATATTAGAGAAATTCTACTATGTAGCAATGCGACGCCGATTCGTAAGTATGATCTTGGATATGTGTGCTGTTTCTGTGAGAAGCAATACCCTAATGCCGAAGAACTAAAGACACATACTATCACAGAACACGATGATAGTGATAAACTAGACTTTATGAAAGGACAACGCACATTGTACTTCTTAGTCAAGCTAGACATTACCGCACTTAAGTGTACCTTGTGCGACACAGAAATAGATTCAGTTGCAGACCTTATCCAACACCTTAAGAACGAACATGGAACGCCAATGTTcacagaaataaagaattatatcATACCATTCAAGTTTGAAGACACTACACTTAAGTGCACTTTCTGCCCACGAATATTCAACAGATTTAAGGTTCTGCAAGAGCACATGTACACACACTATAAAAACTTTGTTTGTGACGTATGCGGCACTGGTTTTGTTAACGAGAAAATGCTTAACACACATCATGACAGCCATAAAGTAGGAATTTTCAAATGCGGACACTGTGTTCAACGTAACGTGAACGCCAAGATTGAAACCGATTGTGACAAAAAAGTGACTCGCAAATGTGCCCGAAGAAAACTCGAACAAGCTGAGGAGCTCAAAATTAATGagttaataaaacaaagaagcAATATACGCCTTATCTTGCAATGTTCCAACGCGACTCCTATTCGATGCAGAGGGGGCATCGGATATGCCTGCTGTTTTTGCGCACAAGAGTTCCCAGATCCAATAGACTTAAAGAAACACACCCTTGAAGGTCACGACGATAAAACTAAACTCAAATTCATGATGGGCAAAATGATGTTTTCATTCCTTGTCAAATTAGACATCACTGATCTTACCTGTAAAATATgcgaaaacaaaattgattctTTAGAACAACTTGTAGATCATTTGATCAAAACACACGATAGGAAGATTTACACTGACATTAAGAGCCACATAATGCCTTTTAAGTTCGATGATGATACACTAAGATGTATGTTCTGCCAAAACGTCTTCAACAAGTTCAAGAACTTGCAACAACATATGAACATACATTGCAGAAAttatatttgtgaattttgtgaTGCaggatttataaataaacacattctCGCATGCCACACAGAAGGGCATAAGACTGGTACGTTCAAATGCGATTTATGTACGAAAGTGTTCGATACCCACAGGAAGAAGAAAAGTCACGAAAAATCCGTTCATATCCACGCAAACTTGCTTAACAAATGCGGATACTGTAATGAGAAATTTACGAATTACAAAAGGAGAGATGATCACTTGGTGCAGGTTCATGGAGTTCAGCTTAAACCTGTCAAATGCAACGCGTGTGACAAAACGTTTGATCACAAAGGCGCACTAACGATCCACACGAAACGAGATCACCTGATGGAGAGACGATACAAATGTGCGCAATGCGATATGAAATTTTTCGGATCTAACGAATTAAAGCTACACATGGTTAAACATACAGGGGTACGGGAGTTCAAATGTGCTGTATGCTTTAAGACATATGGCCGGAAGAAAACGTTAAAAGAGCATATGAGAATACATAATGACGATAGGAGATTTAAGTGCGAGCACTGCGGCCAAGCATTCGTGCAGAAATGTAGCTGGAAAGGCCACATGAGGAATAGGCACGGCGAATTGGTctga
- Protein Sequence
- MKEHQIASKIETAHTKSMVVGKKNTNRGIFQSETDEDGKKIKKKSQKQNEEELFKQRYNIREILLCSNATPIRKYDLGYVCCFCEKQYPNAEELKTHTITEHDDSDKLDFMKGQRTLYFLVKLDITALKCTLCDTEIDSVADLIQHLKNEHGTPMFTEIKNYIIPFKFEDTTLKCTFCPRIFNRFKVLQEHMYTHYKNFVCDVCGTGFVNEKMLNTHHDSHKVGIFKCGHCVQRNVNAKIETDCDKKVTRKCARRKLEQAEELKINELIKQRSNIRLILQCSNATPIRCRGGIGYACCFCAQEFPDPIDLKKHTLEGHDDKTKLKFMMGKMMFSFLVKLDITDLTCKICENKIDSLEQLVDHLIKTHDRKIYTDIKSHIMPFKFDDDTLRCMFCQNVFNKFKNLQQHMNIHCRNYICEFCDAGFINKHILACHTEGHKTGTFKCDLCTKVFDTHRKKKSHEKSVHIHANLLNKCGYCNEKFTNYKRRDDHLVQVHGVQLKPVKCNACDKTFDHKGALTIHTKRDHLMERRYKCAQCDMKFFGSNELKLHMVKHTGVREFKCAVCFKTYGRKKTLKEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -