Xict035926.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421959.2:12859982-12869667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8e-06 0.00019 22.8 0.6 1 23 109 131 109 131 0.96 2 10 0.37 40 6.1 1.7 2 23 137 159 136 159 0.91 3 10 6.6e-06 0.00071 21.1 2.0 1 23 165 187 165 187 0.98 4 10 4.3e-05 0.0045 18.5 1.6 1 21 193 213 193 214 0.95 5 10 1.2e-05 0.0013 20.2 0.2 2 23 226 248 225 248 0.95 6 10 2.4e-06 0.00026 22.4 2.0 1 23 254 276 254 276 0.98 7 10 3.2e-07 3.4e-05 25.2 0.5 1 23 282 304 282 304 0.98 8 10 1.3e-06 0.00014 23.2 4.6 1 23 310 332 310 332 0.97 9 10 9.2e-06 0.00099 20.6 2.2 2 23 339 360 338 360 0.97 10 10 8.9e-05 0.0096 17.5 4.4 1 23 366 389 366 389 0.96
Sequence Information
- Coding Sequence
- ATGGTAGGCGTCGGTGATGGGAGATCTGGTGCGCAGTCGGCTGATTTACCATTCAATAGTATGAAAACGGCAATAAAGACCGAGTTAATAGACCCACCGAGCTCGCCAGACGGGTCACAGACTAGCAACGCCTCCTGGCTTGTTCCAATCAAGGAGGAGGTGAAAGAGGTCCTCCCTGAAAAATACCTGGAAGTTACTATCAAAGAAGAAGTTCCGGAATCTGGGGATGATGAGCCAGCATTTGACGGCCATACATCCGATGAATCGGCTGTTCAAACATCCCCTACTTCTTCTGACGAACTGGACCACCAACGGTCAGGCAGTTTCGCCTGCGATATTTGTGGAAAAAGTTACACAAACACAGCTTATCTACAACGGCACTTACAATTCCATTCCAAAAACGCTGTGCAATGCAACCAGTGCAATAGACAGTTTCTCAACAAATTACGCTTAAACACTCATATTTTTAACCGCCACACTCTCGTGACGCCATACCCCTGCGATCAATGCCCAGAgaaatttaaatctaaatattaTCTAAGGGAGCATAAAAAGACACATTCAGACGAAAAAGCTTATCAATGTTCCGAATGTCTTAAAAGTTTCACTGTCAAGCGCAAATTGCAGAGACATCAAAGTCGAACGAGCTGTAAAAAAACTTCTGACGATCCTATCCCATGTAAAATTTGCAAAACTGTCTTCGAAAATGAGTCTTTATTAAAATCTCATATGAAAGAAGAACATGATAGCGAACGGTCGTTTCCGTGCGATGAATGCTCCACGATTTTCAAGCAAAAAAGTACGTTGATGCGTCATATGCATGTCCACACTGGGATAAGGCCATATCCCTGTCCCCATTGTGGCAAGACATTTACCAGTTCGGGGTTGCTGAAACCTCATTTACGAGTCCATACTGGCGAAAAACCTTACTCCTGCAATATTTGTGACAAAAAATTTGCCCACAAACACAACATGCAAAGACATATGCTAGGTCACGAGAAAATTAAGCACACTGTATGTGATATATGTCACAAAGAGTTTCCAAGAGAAAGTAGATTGAAATATCACATGAAAACTCATGTCAATGAGAAGTATTTCATGTGTAAAGTTTGTCCTAAACGGTTTTCTCATAAGCAGAACGTTATAAGACATTATACTAGGAAGCATCCTGGCCAAACGTATCAGTGTACAGATACGGATGCATCTGTCGCGGCAAAAGTATGGGACACTATGAAAAAGAGATATTGTGATGAAGAAACTGAGGAGATTTTGGGTTGA
- Protein Sequence
- MVGVGDGRSGAQSADLPFNSMKTAIKTELIDPPSSPDGSQTSNASWLVPIKEEVKEVLPEKYLEVTIKEEVPESGDDEPAFDGHTSDESAVQTSPTSSDELDHQRSGSFACDICGKSYTNTAYLQRHLQFHSKNAVQCNQCNRQFLNKLRLNTHIFNRHTLVTPYPCDQCPEKFKSKYYLREHKKTHSDEKAYQCSECLKSFTVKRKLQRHQSRTSCKKTSDDPIPCKICKTVFENESLLKSHMKEEHDSERSFPCDECSTIFKQKSTLMRHMHVHTGIRPYPCPHCGKTFTSSGLLKPHLRVHTGEKPYSCNICDKKFAHKHNMQRHMLGHEKIKHTVCDICHKEFPRESRLKYHMKTHVNEKYFMCKVCPKRFSHKQNVIRHYTRKHPGQTYQCTDTDASVAAKVWDTMKKRYCDEETEEILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364258; iTF_00906371; iTF_01527567; iTF_00906385; iTF_01527581; iTF_01441304; iTF_00623394; iTF_01440332; iTF_00173456; iTF_00039087; iTF_00037081;
- 90% Identity
- iTF_00039087;
- 80% Identity
- -