Xict005492.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421933.2:7075085-7075779[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-08 2.5e-05 25.1 0.0 3 36 17 50 15 57 0.91
Sequence Information
- Coding Sequence
- ATGCCTAGAAACTATTCTAGAAAAACAGACCGACAAGGTTGGGATAAAACCTCCATGAAGAAGGCTATTGAAGCTGTGAAGAGTAATGAAATGGGCTGGCTATTGGCTTCAAACGTGTTTAACGTCCCACAATCGACTCTTAGAAGACATGCACTAGAACAAAATAAAGTCCTAATTCCAACTGCAAAAGGTATGGGTAGGTATAGGAGTGTCTTCACATATGAGATGGAACGAGAGCTGGTAGAACATATAAAATTACTAGGAACGAGATTGTTTGGATTCACAAGAAAGGAAGTTTTGGAATTGGCCTACCAGTTCGCAGATGTTAATAATATTCCTcataacttcaacaatgaaacaaAGATGGCAGGCAAAGAATGGTTGACTGGATTTCGACAACGACACCCAGACATATCCTTGAGGAAACCTGAAGCGACTTCAGCTGCAAGAGCCCAAGCCTTCAACAAGCCGCAAGTAGCACTCTTTTTTCAACACTTATCAAGACATTATTCAGAGCAATAA
- Protein Sequence
- MPRNYSRKTDRQGWDKTSMKKAIEAVKSNEMGWLLASNVFNVPQSTLRRHALEQNKVLIPTAKGMGRYRSVFTYEMERELVEHIKLLGTRLFGFTRKEVLELAYQFADVNNIPHNFNNETKMAGKEWLTGFRQRHPDISLRKPEATSAARAQAFNKPQVALFFQHLSRHYSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00290629;
- 90% Identity
- -
- 80% Identity
- -