Xict008172.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421935.2:275012-276958[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-08 1.3e-05 26.0 0.0 1 42 15 55 15 57 0.95
Sequence Information
- Coding Sequence
- aTGCCTCGTAATTATAAACGGAAAACTAACCGCGGGTTGTGGTCGGAAGACTCCATGCTCAAAGCGCTGGATGCTGTTAAAAATGGCATGCCATTTAGAACAGCAAGTAAACAGTTTGGAGTGCCTGTAATGTCACTAAAAAGGCGGGCTAAAGGCAAAAATAAAGTGGCTGTcggtgcaataaaatatttaggtggaaaaaaaacagtttttacagCAGAACAGGAAATTGAGCTCGTGAAGCACATTAAAGATATGGAGACGAGAATGTACGGATTAACACGACAAGATGTTGTATCGTTAGCATATCAACttgcagtaaaaaataatatcaccCAGCCTTTCAACAAAGAAAAAGCAGGATATGATTGGCTAAGAGGATTCCGTCAGCGGCATCCAGATATAGCGCTTCGGGCACCTGAATCCACTTCTACTGCTCGAGCACGGGCCTTTAATAAACCAGTGGTAGATAAGTTTTATTCCACATTAAAATGTGTTCAAGAGACGAAAAACCATCCATGCCACCGTATCTATAACGTTGACGAGACTGGCATTTCTACGGTGCCTACCAAAAATACAAAGGTGTTTGCAACAACTGGACGTAAACAGGTAGCACGAGTTACTTCAGCTGAAAGGGGGGAGACTACAACAGCTGTAATTTGTATGTCTGCTTCTGGAACTTTTATACCACCCATGTTTATCTTTCGAAGGGTTCGTATGAAGATGGAACTAATAGATGGCGCACCGCCAGGCTCCGCCTGGGCCTGTAATTCATCTGGATGGATGAATCTAGAAGTTTTTACCAAATGGTTTGACCATTTTTTAAGCTACACGAAACCATCTGCGGAGGACCCAGTGCTGTTGATTTTAGATGGCCACCTTTCACACACAAAAAATTTGGAATTGATTTTAAAAGCTCGAGAAAATCACGTTACTATTGTCTGTCTGCCTCCACACTGCACCCATAAACTGCAACCTTTAGACGTCAGCTTGATGTATCCCTTGAGCATTTACCACAATCAGTCACTCGAAAAATGGATGAACAACAATCCTGGCAGACCAGTGACTGTATTTCAGATTGCAAAGATTTTTGGAGAGGCTTATTTAAAAGCAGCAGTCCCATTAAATGCCATCAATGGGTTTGCCAAAACCGGCATATATCCTTTCAACCCGGATGTGTTCACCGAAGCTGATTTTATCGCTGCTGCAACAACAGAAATGGAATTTAATGAAGACTCCAGTGTAGTAGAAATGCCTACAACGGATTCAAACATACGTCAACTACCAGCAAATGATCCCTCACCACAAACCCTCACATTACAGGACTGCATAGATTTGCAGAATAAAACACCGTCACCAACTCCTGTTAATGATATGAATTTTTCATTTCGCAGTCCTTTGTCCCCTTTACCATCTACGAGCTACGCACGCAACTCAAATGTATCGCCATCCATCCTTGAACATAGTCAATATGAACCTTTTAATGTTACACCAGCCCAAATTCATCCATTGCCAAAAATTGTGGGTAAAAGAAGCCATCTTAAGAGAAAACGAATAGACACATCAATATTAACTAGCACGccatacaaaaattatttagaggaagaaagaaataaaaagacggaaaaggaaaatagaaaaacaaataaaaaacaacaaaatgtaaaaaaaactcatcCTAAAAAGAAAAGGAAGGGAGTAGGCAAAGGAATGTCAAATAAAAGGAAGAATATTGTGTCAGAGTCgtctgaagaagaagaagacgcaGAATGTCTTTTTTGTACGGAAACATTTTCCAAAGACGATAGGGGCGAGGGATGGATTAAATGTTGTGGATGCCAAAGATGGGGCCATGAAGCTTGTGCAGGGATAGATAGCGATGATGATGAGTTTACATGCGATTGGTGTAGAAATACAACGCCAGGAAAAAGACGCTTAGAACTataa
- Protein Sequence
- MPRNYKRKTNRGLWSEDSMLKALDAVKNGMPFRTASKQFGVPVMSLKRRAKGKNKVAVGAIKYLGGKKTVFTAEQEIELVKHIKDMETRMYGLTRQDVVSLAYQLAVKNNITQPFNKEKAGYDWLRGFRQRHPDIALRAPESTSTARARAFNKPVVDKFYSTLKCVQETKNHPCHRIYNVDETGISTVPTKNTKVFATTGRKQVARVTSAERGETTTAVICMSASGTFIPPMFIFRRVRMKMELIDGAPPGSAWACNSSGWMNLEVFTKWFDHFLSYTKPSAEDPVLLILDGHLSHTKNLELILKARENHVTIVCLPPHCTHKLQPLDVSLMYPLSIYHNQSLEKWMNNNPGRPVTVFQIAKIFGEAYLKAAVPLNAINGFAKTGIYPFNPDVFTEADFIAAATTEMEFNEDSSVVEMPTTDSNIRQLPANDPSPQTLTLQDCIDLQNKTPSPTPVNDMNFSFRSPLSPLPSTSYARNSNVSPSILEHSQYEPFNVTPAQIHPLPKIVGKRSHLKRKRIDTSILTSTPYKNYLEEERNKKTEKENRKTNKKQQNVKKTHPKKKRKGVGKGMSNKRKNIVSESSEEEEDAECLFCTETFSKDDRGEGWIKCCGCQRWGHEACAGIDSDDDEFTCDWCRNTTPGKRRLEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821761;
- 90% Identity
- iTF_01531944;
- 80% Identity
- -