Xict004960.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421933.2:2784403-2786350[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 1.1e-05 26.2 0.0 1 42 15 55 15 57 0.95
Sequence Information
- Coding Sequence
- aTGCCTCGTAATTATAAACGGAAAACTAACCGCGGGTTGTGGTCGGAAGACTCCATGCTCAAAGCGCTGGATGCTGTTAAAAATGGCATGCCATTTAGAACAGCAAGTAAACAGTTTGGAGTGCCTGTAATGTCACTAAAAAGGCGGGCTAAAGGCAAAAATAAAGTGGCTGTcggtgcaataaaatatttaggtggaaaaaaaacagtttttacagCAGAACAGGAAATTGAGCTCGTGAAGCACATTAAAGATATGGAGACGAGAATTTACGGATTAACACGACAAGATGTTGTATCGTTAGCATATCAACttgcagtaaaaaataatatcaccCACCCTTTCAACAAAGAAAAAGCAGGATATGATTGGCTAAGAGGATTCCGTCAGCGGCATCCAGATATAGCGCTTCGGGCACCTGAATCCACTTCTACTGCTCGAGCACGGGCCTTTAATAAACCAGTGGTAGATAAGTTTTATTCCACATTAAAATGTGTTCAAGAGACGAAAAACCATCCATGCCACCGTATCTATAACGTTGACGAGACTGGCATTTCTACGGTGCCTACCAAAAATACAAAGGTGTTTGCAACAACTGGACGTAAACAGGTAGCACGAGTTACTTCAGCTGAAAGGGGGGAGACTACAACAGCTGTAATTTGTATGTCTGCTTCTGGAACTTTTATACCACCCATGTTTATCTTTCGAAGGGTTCGTATGAAGATGGAACTAATAGATGGCGCACCGCCAGGCTCCGCCTGGGCCTGTAATTCATCTGGATGGATGAATCTAGAAGTTTTTACCAAATGGTTTGACCATTTTTTAAGCTACACGAAACCATCTGCGGAGGACCCAGTGCTGTTGATTTTAGATGGCCACCTTTCACACACAAAAAATTTGGAATTGATTTTAAAAGCTCGAGAAAATCACGTTACTATTGTCTGTCTGCCTCCACACTGCACCCATAAACTGCAACCTTTAGACGTCAGCTTGATGTATCCCTTGAGCATTTACCACAATCAGTCACTCGAAAAATGGATGAACAACAATCCTGGCAGACCAGTGACTGTATTTCAGATTGCAAAGATTTTTGGAGAGGCTTATTTAAAAGCAGCAGTCCCATTAAATGCCATCAATGGGTTTGCCAAAACCGGCATATATCCTTTCAACCCGGATGTGTTCACCGAAGCTGATTTTATCGCTGCTGCAACAACAGAAATGGAATTTAATGAAGACTCCAGTGTAGTAGAAATGCCTACAACGGATTCAAACATAGGTCAACTACCAGCAAATGATCCCTCACCACAAACCCTCACATTACAGGACTGCATAGATTTGCAGAATAAAACACCGTCACCAACTCCTGTTAATGATATGAATTTTTCATTTCGCAGTCCTTTGTCCCCTTTACCATCTACGAGCTACGCACGCAACTCAAATGTATCGCCATCCATCCTTGAAGATAGTCAATATGAACTTTTTAATGTTACACCAGCCCAAATTCATCCATTGCCAAACATTACGATAGGGGCGAGGGATGGATTAAATGTTGTGGATGCCAAAGATGGGGGCCATGAAGCTTGTGCAGGGATAGATAGCGATGATGATGAGTTTACATGCGATTGGTGTAGAAATACAACGCCAGGAAAAAGACGCTTAGAACTataa
- Protein Sequence
- MPRNYKRKTNRGLWSEDSMLKALDAVKNGMPFRTASKQFGVPVMSLKRRAKGKNKVAVGAIKYLGGKKTVFTAEQEIELVKHIKDMETRIYGLTRQDVVSLAYQLAVKNNITHPFNKEKAGYDWLRGFRQRHPDIALRAPESTSTARARAFNKPVVDKFYSTLKCVQETKNHPCHRIYNVDETGISTVPTKNTKVFATTGRKQVARVTSAERGETTTAVICMSASGTFIPPMFIFRRVRMKMELIDGAPPGSAWACNSSGWMNLEVFTKWFDHFLSYTKPSAEDPVLLILDGHLSHTKNLELILKARENHVTIVCLPPHCTHKLQPLDVSLMYPLSIYHNQSLEKWMNNNPGRPVTVFQIAKIFGEAYLKAAVPLNAINGFAKTGIYPFNPDVFTEADFIAAATTEMEFNEDSSVVEMPTTDSNIGQLPANDPSPQTLTLQDCIDLQNKTPSPTPVNDMNFSFRSPLSPLPSTSYARNSNVSPSILEDSQYELFNVTPAQIHPLPNITIGARDGLNVVDAKDGGHEACAGIDSDDDEFTCDWCRNTTPGKRRLEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034497; iTF_00373970; iTF_01034523; iTF_01034496;
- 90% Identity
- iTF_01531944;
- 80% Identity
- -