Xict017429.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421942.2:12856682-12857155[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-12 1.5e-09 38.6 0.0 1 38 25 62 25 67 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATATATAAGAACATATAGGAACTTAAGAAAAGGTAAACGTTTCATGCCGTACTTCTCTTATAGTAATGATGACTTGAACAAGGCTGTATCAGACGTTAAATCTAAAAAACTGTCTACCAGAGAAGCGGAGCAGAAATATGGTGTCCCTAAAAGTACAATTAACCGTCATTTAAAAGCGGAAAACTTACTCTATTCTAGACCAGGGCACCCTACATTATTTTCAGAGGCGGAAGAGAAAACGTTCGTCAATTATGTTAAGCATATGGGGGACTGGGGATTCCCCCTAGATCTAATGGATTTAAGAGTTTTCgctcaaaaatatttacatagaaTAGGAAGGACAGTTTATAGACTGAAAGATAATTTACCGGGACGGGATTGGGCGGCTTGTTTTGTACAACGGCATAAAGATGAGATTTCTAACAGATGTGCTGCAAATATATCGTCAGAcatgaaaaaatga
- Protein Sequence
- MVRKYIRTYRNLRKGKRFMPYFSYSNDDLNKAVSDVKSKKLSTREAEQKYGVPKSTINRHLKAENLLYSRPGHPTLFSEAEEKTFVNYVKHMGDWGFPLDLMDLRVFAQKYLHRIGRTVYRLKDNLPGRDWAACFVQRHKDEISNRCAANISSDMKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952619;
- 90% Identity
- iTF_00952619;
- 80% Identity
- -