Wsmi020637.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- nfxl1
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:62427481-62430382[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.45 2.8e+04 -3.0 1.4 14 19 207 212 207 212 0.86 2 15 0.08 4.9e+03 -0.6 0.8 4 10 243 249 242 249 0.95 3 15 3.5e-08 0.0021 19.7 16.9 1 19 257 274 257 274 0.99 4 15 6.7e-06 0.41 12.4 11.2 1 19 310 329 310 329 0.95 5 15 1.2e-08 0.00076 21.2 14.7 1 19 364 382 364 382 0.99 6 15 0.88 5.4e+04 -3.9 0.8 6 10 407 411 406 413 0.54 7 15 2.9e-06 0.18 13.6 12.6 1 18 417 434 417 435 0.93 8 15 4.2e-05 2.6 9.9 14.0 1 18 469 486 469 487 0.94 9 15 3.4e-09 0.00021 23.0 15.8 1 18 496 513 496 514 0.97 10 15 0.0032 2e+02 3.9 13.2 10 19 561 570 552 570 0.91 11 15 0.016 1e+03 1.6 4.7 3 12 583 592 573 592 0.85 12 15 6.7e-05 4.1 9.2 6.0 1 11 663 673 663 674 0.96 13 15 0.35 2.2e+04 -2.7 0.7 15 18 687 690 686 691 0.81 14 15 0.0011 66 5.4 16.7 4 19 704 719 702 719 0.93 15 15 3.7e-07 0.023 16.5 13.2 1 17 770 788 770 790 0.86
Sequence Information
- Coding Sequence
- atgTCGCATCGCAACCGAATTAACCCCAAGGGTAACAAGCAAAGTGACAATCCATGGCACCGAAGCGGTCCCGACGATGCCTTCTACAATGTCTCTCGGCAGCAGCGACCAACAAAGTCATCCGGAGCCGGTTCGAAGGCCACCAATCCACCGCCAGCCGCAGCGAAAAAAACACCGACAGCAGATGAAAATTTCCTCAAACACTCGGAGGAAAAATTCAATCAAGCCCATCGAAAGCATGTAGAATCGGCCAAAAAGTATACCCAGCATTACGAATCTAGCGAGGAAGAAGACGAAGGGGACAGCAACAATCAGGATATATTGGTAACTGTCTTTAAAAATTATTCAGCGTCCAACGGTGATATTGGCAAGACGCAAGAGTATCTGCAGAATTTGCTAGAATCCCGTTCGGCAGTTTGTCTAATCTGTATTGGAACGGTCAAACGAGCGGACGCGATTTGGTCGTGCAAGACCTGCTATACCTTCTTCCATCTGCTATGCATCCAACGATGGGCAAACGATAGTATATCACAAAAACGCATCAGCCACGAGCTGCAGGAAGGATACTACAACAACCGGGGTGAGTACGTCCCAAAGCCGACCCTTTCCGTGCACTGGGATTGCCCGAAATGTCGGAAGGAATACGAGCCAGTTGATATTCCACGACACTACGAGTGTTTCTGTGGCCACGAACAAAATCCACAGAATCATGTTTGGCTGATTCCGCATTCATGCGGGGAAACTTGCCGAAAAAAGCTTGTCCCCGACTGTGGTCACCGCTGTGTTCTACTTTGCCACCCAGGGCCATGTCCGCCTTGCCCCCAGACCATTTCGGTAGCCTGCAAGTGCGGTCAGTCAGCAGCAAAAACGATCCGCTGCTCGCAGCGCAGCTGGACGTGCTTGAAAACgtGTAAGCTTAAACGCAACTGCGGCATTCACGAGTGTGGTGAGATGTGCCACGCGGCGGACGAGTGTCCTCCATGCAAAAGCAGAAGCCGTCAGAAGTGCCTCTGTGGAAACAAAGTCAAGGAAGTCAACTGTTCCGAAGCACAGTGGCAGTGCGGTAAAGTATGTGGTAAACAATACGATTGTGGCTTGCACCGTTGCGAGAAAGTATGCCACGATGGGGGTTGCGGAGAATGTCCGCAGGGTCTGCCACGGACATGCCCATGTGGAAAGACTAGCTCGGTTGCATCATGCTCAGAGGACATCGGAACATGCGGTGATACATGTCAAAAGTTTTTAGACTGCCAAATCCATCGGTGCAGTGAACGCTGCCACCAAGGAAACTGTGGTCAGTGCGTCGAGCTCATTAGAAAATCCTGCCGATGCGGAAATACGAGTAAAGAAGTGGCCTGTTACAAACAACTGAACTGCGAaacaaaatgcaaaaacattAAAAGTTGCAATAAACATCCGTGTAATCGCAAATGTTGCGATGGAGACTGCCTACCCTGTGATAAACTTTGTGGTAAAACATTACCCTGTGGAAAGCATAAGTGCAGCTCACTTTGTCATCATGGTCCATGTTATCCGTGCAACCAAAAGGCAACAGTTAAATGCCGATGCGGTGGAACCACAGTAGAAGTTCCCTGTGGTCGTGAGAAAAAGGTGGGTTCACCAAAATGCCGCCTACCGTGCCGCATACACTCCAAGTGTCATCACTCGAACCCTCACAATTGTCATCAAGGGGACTGTCCGCCGTGTCAACAGATTTGTGGACTGGTAAACGACACGACTAATTGTGAGCATCCCTGTGCGGCCAAGTGTCACGATGCCGTACGGGTTGTGACGAAGGATAAAAATTTTAAGCCCGTAGGACCGTGGGATGTTCCAATGGAAATAGTGGAGATCAAGCAGCTCCCTCATCCGCCGTGTGAAGTTAAAGTATCGGTCACCTGCATCGGTGGACACGAGGCCGCTTTGTGGCCGTGCTACAATTCAAAACCAACTTCATGTGGTCGCCCTTGCGGAAGGGCACTGCGCTGTGGTGTACACACATGTCAGTTACAGTGCCACGCAGTGAAACGAATCAACTCTACGGAACAGGATCCAAGGTGCCAGTCTTGTGACGCAGATTGTCTAATTCCACGTCCAGCTGGATGTGTTCATCCCTGCAAAAGACCTTGTCACCCGGCACCATGCAATCCATGCCAAGTACCAACCAAGACTAGTTGCCACTGCGGGTTGACACAGATTTTCTATAAATGTCACGAGTTCAATGCTAACGATAAAACCGAGGCGGAGCTGAAACTGTTCCGAGAAAGTATACTCAGTTGCGGACAAAAGTGTATGAAGAATTTTCCCTGTGGTCATCGCTGCAACTCGACCTGTCACTCGGGGGAATGTCCCAATCCAGAACAGTGCAGTAAAAAGGTGAAAATTTCCTGCGACTGTCGCAACCGGAAAGTGGACGTCAATTGTAACGTTGCTCGCAGCAAAAGCAAAACTTTGGAGTGCGACGAGAGTTGTGCCCAATTAAAGGAAATCAAAAATCGAGAACTGGCGGAACTGGAGCTACACCGTAAGCAACAACAGGAGGCGGAAAATCAGCGCGCCCTAGAGGAGTATGAGAAAAAGTTTGGTCGCAAAAAATATCGCGAAAGGAAACGTGTTCAGGTGGAAGATTCCAAAGACAGCCACTTACTGCTGTACGTCTTGTCAGCCGCTGGGTGTATTATCGTCGCGGTTGTTGGTTATTTCTTTTTCACTAGTAACTAA
- Protein Sequence
- MSHRNRINPKGNKQSDNPWHRSGPDDAFYNVSRQQRPTKSSGAGSKATNPPPAAAKKTPTADENFLKHSEEKFNQAHRKHVESAKKYTQHYESSEEEDEGDSNNQDILVTVFKNYSASNGDIGKTQEYLQNLLESRSAVCLICIGTVKRADAIWSCKTCYTFFHLLCIQRWANDSISQKRISHELQEGYYNNRGEYVPKPTLSVHWDCPKCRKEYEPVDIPRHYECFCGHEQNPQNHVWLIPHSCGETCRKKLVPDCGHRCVLLCHPGPCPPCPQTISVACKCGQSAAKTIRCSQRSWTCLKTCKLKRNCGIHECGEMCHAADECPPCKSRSRQKCLCGNKVKEVNCSEAQWQCGKVCGKQYDCGLHRCEKVCHDGGCGECPQGLPRTCPCGKTSSVASCSEDIGTCGDTCQKFLDCQIHRCSERCHQGNCGQCVELIRKSCRCGNTSKEVACYKQLNCETKCKNIKSCNKHPCNRKCCDGDCLPCDKLCGKTLPCGKHKCSSLCHHGPCYPCNQKATVKCRCGGTTVEVPCGREKKVGSPKCRLPCRIHSKCHHSNPHNCHQGDCPPCQQICGLVNDTTNCEHPCAAKCHDAVRVVTKDKNFKPVGPWDVPMEIVEIKQLPHPPCEVKVSVTCIGGHEAALWPCYNSKPTSCGRPCGRALRCGVHTCQLQCHAVKRINSTEQDPRCQSCDADCLIPRPAGCVHPCKRPCHPAPCNPCQVPTKTSCHCGLTQIFYKCHEFNANDKTEAELKLFRESILSCGQKCMKNFPCGHRCNSTCHSGECPNPEQCSKKVKISCDCRNRKVDVNCNVARSKSKTLECDESCAQLKEIKNRELAELELHRKQQQEAENQRALEEYEKKFGRKKYRERKRVQVEDSKDSHLLLYVLSAAGCIIVAVVGYFFFTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -