Wsmi030157.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:187549892-187552293[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.8 9.6e+02 2.3 0.5 1 23 380 405 380 405 0.79 2 11 1.6 1.8e+02 4.6 0.6 2 22 410 430 409 432 0.82 3 11 0.0019 0.21 13.8 0.5 2 23 439 460 438 460 0.96 4 11 0.00024 0.026 16.7 0.4 2 23 467 488 466 488 0.98 5 11 0.00023 0.025 16.7 0.9 2 23 495 517 494 517 0.97 6 11 0.036 3.9 9.8 0.5 1 19 523 541 523 543 0.96 7 11 0.0069 0.75 12.1 6.0 1 23 570 592 570 592 0.98 8 11 0.11 12 8.3 0.4 1 23 596 618 596 618 0.98 9 11 0.0014 0.16 14.2 0.9 1 23 624 646 624 646 0.97 10 11 4e-05 0.0044 19.1 2.8 1 23 652 674 652 674 0.97 11 11 1.4 1.5e+02 4.8 1.2 8 23 684 699 683 699 0.94
Sequence Information
- Coding Sequence
- ATGGTGCGTAAATGCTGCGTTCCCGGGTGCAATTCAAATTATGACGCAGTTCTGCGTTACAGTATGTCGCCGATCAGCACCTTCAAATTTCCCGATGACCCTGAGCATCGAAACCGCTGGGTGCGGGCTGTTCGGAGACAAGAGGGCTGGAAACCTGGACGTACGGCGTGCATTTGTATTCACCATTTTAAGCCTGAGGATATCCTAAAATACGATAAACCGGCTAAACTGAAACCTGATGCAGTTCCTTCAGTTTTTGGAAGCAGTCAGACAAAGGCGGATGGTTTGGTGATTAAACGTGGGAGGCCAAAAAAGGTTGCTGCTAAGGGCCCGTTTATCGACAGTGAATCCAACGATCAACTTCATACCAATGACGAGCGCGAAAATGGAGAACGTGATTTGATGGAAGAACTGATTTTGGACTTTGGTGATTTTTTATCGCGAATAGAAAAAACAGATTGTTTTGACGGTTGGCATCATTACCAACACGATAaagttttacatttttataGTATTTCGGACGAGAACAAAGATAAAGCTATTCGAATCGAGAATAGTGTCAAAGTTTTCGAGGATATGACTATGTACCTTTTTCTGAAAGAGACCAAACAAGCGGATGAGTGTCTACAATGGATTTTGGGACATGAGCTGAAAGTTCGTCGTTGGTCACAGTTtgataatattttgaaaaaatatcgttaCGCTTCTACGAGTGATAAAAGAGAAGATAGTAAACCTTCGCAAATCGAACGACTAGATAATGCTGAATATATTGATAACGAAAATGATAGTTTCGAGCAAGAATTAGAAATAACGATCGAAAATGAGAACAACGATAATTTTAAAATAGTCGATATCGCCATAGAAAAACAAGCTACCTCGCGAGAACCAATTGAATTTCTTTCGATagatgccagtcaaacaaataGTTACGATTGCATTTCTTTATCGAAGAATCCGCTCAACACGAACAAAGGACGAATACTCACACAAAATGATAACTGCGAAAGAAGGCATGTCAGGGATACTATAAGAACTCTTAAATTGGCTAAAAATAAATGCTTCATCTGTGACCTAGAACACGAAAGTATTGAAGAATTCGAACATCACTTACCAAGTCACATTAGTATGATACCGTATAAATGCCAACGGTGTGTTTCGCAGGACGTAACATTAACGACGCTAGCGTCATTAAATAAACATTTTCTAATGCATTTAAAACCACTGAAATGCCGCACCTGTGATGTGCGGTTTTCAAGCTACGGGACTAGATTGTTGCACGAGGAAAACAGTCATTCGAATCGAGGACCAATATCGTGCGAAGTTTGTGGGAAGGTCCTACGTTCCTTGCGGGGTTATCAGCACCACGTGAAGGTGCACAGCAATCCGGAAGCAGTCAAATGCCAAGTTTGCGAGAAACAGTTATCTTCTAGTTACGAGTTGAAATTACATCTACGAGTTCACACAaaagaaaaaccaaacaaatgccCGTTTTGTACTGCTTCATTCAACAGAGTTTCGAACCTAGTCGCACATAAGCGCCGATTTCATAGCAAAGAAAAGCCGTTTGTATGCCTTTTTTGTGATGACCGGTTTCGGACCAGTGTCGAGCTTAAACGACATTCTTCTTGTCACAACCCAGAATCATCCGATAATGTGGCGGAAAAACAAAATCGGCGATTGACAATAGTCGATTCACAGAAGTTGTATCATTGCAAAGTTTGTGATAAGCGGCTGCCTACTCGAACAAGCTACCATTCTCACATGCGTCAGCACAGAAAACGGTTTCAGTGTAGCTTCTGTGGTCTCCAAATCGGGCAGCGAAGAGATTTTATCGACCACGAGAACACCCACACTGGTGCTCGCCCTTATGAATGCGAGATTTGCTCTAAGCGTTTTCAAACATCATCCACGTACTACGGTCATCGAGCAATCCACTCTGGCGTTAAACGGTTTGCTTGTGATAATTGCGATCGTCGTTTCACTAGACTGAATCATTTGATCGTGCACAAAAAAACGCATTCGGCACCGAAAGCCAAATCAGGTAGCAGATCGTGCAGGAATCGAGAAACATTTACCAAGCACTTGAAGTCACATGAAGATCAACAAGGAAGAGGGAGTgtagatgaaataaaacaggCTCAATCTACGGTCACGATTCAAACCGTTTCGGAAGCTATTCCGTGTACAGCGATTCAGCAGAGTAATGCCACCACGGAACAAGTTCAGCAGCTCATTCGTACTGTCGATGGACGAGAGGCAATTTTACTCTCTGCCGACGTAATCATTcccaataatattataatattgcAGCAACAGTGCGTAGAAACGGAGGTGGAAAGTTGA
- Protein Sequence
- MVRKCCVPGCNSNYDAVLRYSMSPISTFKFPDDPEHRNRWVRAVRRQEGWKPGRTACICIHHFKPEDILKYDKPAKLKPDAVPSVFGSSQTKADGLVIKRGRPKKVAAKGPFIDSESNDQLHTNDERENGERDLMEELILDFGDFLSRIEKTDCFDGWHHYQHDKVLHFYSISDENKDKAIRIENSVKVFEDMTMYLFLKETKQADECLQWILGHELKVRRWSQFDNILKKYRYASTSDKREDSKPSQIERLDNAEYIDNENDSFEQELEITIENENNDNFKIVDIAIEKQATSREPIEFLSIDASQTNSYDCISLSKNPLNTNKGRILTQNDNCERRHVRDTIRTLKLAKNKCFICDLEHESIEEFEHHLPSHISMIPYKCQRCVSQDVTLTTLASLNKHFLMHLKPLKCRTCDVRFSSYGTRLLHEENSHSNRGPISCEVCGKVLRSLRGYQHHVKVHSNPEAVKCQVCEKQLSSSYELKLHLRVHTKEKPNKCPFCTASFNRVSNLVAHKRRFHSKEKPFVCLFCDDRFRTSVELKRHSSCHNPESSDNVAEKQNRRLTIVDSQKLYHCKVCDKRLPTRTSYHSHMRQHRKRFQCSFCGLQIGQRRDFIDHENTHTGARPYECEICSKRFQTSSTYYGHRAIHSGVKRFACDNCDRRFTRLNHLIVHKKTHSAPKAKSGSRSCRNRETFTKHLKSHEDQQGRGSVDEIKQAQSTVTIQTVSEAIPCTAIQQSNATTEQVQQLIRTVDGREAILLSADVIIPNNIIILQQQCVETEVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524861;
- 90% Identity
- iTF_01524861;
- 80% Identity
- iTF_01524861;