Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:231172566-231174530[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0097 1.1 11.6 0.4 2 23 114 136 113 136 0.94

2 7 5e-05 0.0055 18.8 1.5 1 21 164 184 164 187 0.96

3 7 4.9e-05 0.0054 18.8 2.0 2 23 327 348 326 348 0.96

4 7 9e-05 0.0098 18.0 4.5 1 23 354 376 354 376 0.97

5 7 0.00066 0.072 15.3 2.8 1 23 382 404 382 404 0.97

6 7 2.3e-05 0.0025 19.9 3.4 1 23 410 432 410 432 0.98

7 7 0.07 7.6 8.9 4.2 1 20 438 457 438 458 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0097	1.1	11.6	0.4	2	23	114	136	113	136	0.94
2	7	5e-05	0.0055	18.8	1.5	1	21	164	184	164	187	0.96
3	7	4.9e-05	0.0054	18.8	2.0	2	23	327	348	326	348	0.96
4	7	9e-05	0.0098	18.0	4.5	1	23	354	376	354	376	0.97
5	7	0.00066	0.072	15.3	2.8	1	23	382	404	382	404	0.97
6	7	2.3e-05	0.0025	19.9	3.4	1	23	410	432	410	432	0.98
7	7	0.07	7.6	8.9	4.2	1	20	438	457	438	458	0.94

Sequence Information

Coding Sequence: ATGTGCACCAAAACCCTGTCGTGTCCACTGTGTTGTCAGTCTAATTTTCCGAACATCGATGCCTTACGTATTAGCCTACTTAAGGTTACATCGCGGCCATTAAAATGTCCGATCTGTGCTGAGCAACTGCTCGGGTTGGATAAACTGACGATTCATCTTTTCGGACACTCGATCCTAGGACAAGAAGAAGAGCGTGCTCCCGTGgtggaagaaaaaaagaaacctACAATAACGGCTTCACTGAAAAATGTTCGGAAACCTAAAAAAGAAGCAACAGTCATCAGCGCAGGTGTCATCAATAATGGAAACTTTCGGGAGAAACAAAGTGTCAACAAAGTCAAGTGCGACATTTGCGCAGAAGAATTTAGTGATaaaaattttctcaaaatgCACAAATCTGTGTTTCACGAGATTTCGACGGTATCAAGCCGAAGCCCCCCAAAAACTAGCCAGGAAACGGGGATGACAATCGAAGAACCCAAAGATCTCTTCCAATGCAGCATGTGCCCAAAAGCTTTTAGGATGAAAGGATCACTGAAGATACATATACGGTGTGTGCACTTGGGGTGCCAGAAGAAAGGTACACTGAGTAGTAATGGTTGCGCCACCCCTCAATCAACGGTCACCAGTACCACCACAACATCCGCTTACCACTATCAAGATGTGATGCAGTTTGATATGCAAAACAGCAATCAAGTGATGTCAACACAGACTCAACCGCAACTTGCACCGCTAACATCAACAGTTTCGATAGCACCCTCTATGGGTCAAGCGCAAATAATAAAAATCCTAGATCCTAGACAATTGGCGGAATTCATCTACGTAGCTAATCACCAGCAGCAAGCCGTCGAATGTCCGGCTCCAAATGCTAGTCCACCCAGTGCTGCTTCTCCAGCTGGGAACTTTTCCGACATTCCCTCCCCATCGCAGGCCTCTCCGCAATCGCTGGGAACTATTTCAGAGACGAACAAACAGTGGGAGTGCGATGTTTGCTTGAAAAGTTTTACCACCAAATACTTTCTGAAGAAACACAAACGGCTTCATACAGGTGAAATGCCCTACTCATGCCAAATCTGCGGAAAATCGTTCACCTTCCAGCAATCCTATCACAAGCATCTTTTGTATCACAGTGACGAAAAGCCCCACATCTGTACGGTGTGCAATCGAGCCTTCAAAGAACTTTCGACGCTGCACAACCATGAACGGATCCATAGCGGGGAGAAACCTTTCTCTTGCGAAACTTGTGGCAAGTGCTTTCGTCAGCGGGTATCCTATCTAGTCCACCGGAGAATCCACACCAACACACAGCCCTACAAGTGCACGGCATGTGACAAAAGCTTCCGTTACAAGGTATCTCAGCGCACACACAAATGTCCGGCTCAACCGCCAGGAACCGTCGTCCGTCAGACGGGTGATTTGCTGCAAAAGCTCCTCCAGTCATCGGCAATTCTCCCGACTCTACACGACGCGGCTTCCCCGATGACTGATTCAGAACCGCCGCACTCCATCGAGAGTACCGACCAATCCGAACCACAGGAGATTAAGTCTGAAGACTACATCAACCGTACCCTGGACGAACTGTTCAATGAGTCCTACGACAAAATGGGTATCGGACATCCTACCGGCAATTTTGGAACCGACCAGGACCAACCCCGCCAGTTGCTGTACGACTCATCGAATCATCGTGGTGACAGCCAGAATCACTCGACAGGCACCGGTGAAAGTGCCATTGTTCCCCGGATCGAAAATCTTTGCTTGCTCTCCCCCGATCCTCAGGACGTTATTGCATTCGACGGTGATACCATGGAGGTTATTGACTCGATTAAACTAGACCTACTGTACAACTGA
Protein Sequence: MCTKTLSCPLCCQSNFPNIDALRISLLKVTSRPLKCPICAEQLLGLDKLTIHLFGHSILGQEEERAPVVEEKKKPTITASLKNVRKPKKEATVISAGVINNGNFREKQSVNKVKCDICAEEFSDKNFLKMHKSVFHEISTVSSRSPPKTSQETGMTIEEPKDLFQCSMCPKAFRMKGSLKIHIRCVHLGCQKKGTLSSNGCATPQSTVTSTTTTSAYHYQDVMQFDMQNSNQVMSTQTQPQLAPLTSTVSIAPSMGQAQIIKILDPRQLAEFIYVANHQQQAVECPAPNASPPSAASPAGNFSDIPSPSQASPQSLGTISETNKQWECDVCLKSFTTKYFLKKHKRLHTGEMPYSCQICGKSFTFQQSYHKHLLYHSDEKPHICTVCNRAFKELSTLHNHERIHSGEKPFSCETCGKCFRQRVSYLVHRRIHTNTQPYKCTACDKSFRYKVSQRTHKCPAQPPGTVVRQTGDLLQKLLQSSAILPTLHDAASPMTDSEPPHSIESTDQSEPQEIKSEDYINRTLDELFNESYDKMGIGHPTGNFGTDQDQPRQLLYDSSNHRGDSQNHSTGTGESAIVPRIENLCLLSPDPQDVIAFDGDTMEVIDSIKLDLLYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -