Wsmi037144.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- zfy1
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:13511197-13513318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.062 6.7 9.1 0.8 2 23 155 176 155 177 0.94 2 13 0.03 3.3 10.1 0.1 2 20 189 207 188 209 0.94 3 13 0.00027 0.029 16.5 0.5 1 21 216 236 216 241 0.92 4 13 0.041 4.4 9.6 0.9 2 23 321 343 321 343 0.96 5 13 0.0059 0.65 12.3 0.1 3 20 356 373 354 375 0.93 6 13 0.0023 0.25 13.6 4.6 1 22 383 404 383 408 0.93 7 13 0.14 15 7.9 0.5 2 21 483 502 483 503 0.92 8 13 3 3.2e+02 3.8 0.2 1 23 509 532 509 532 0.90 9 13 0.00023 0.025 16.7 3.6 1 23 539 561 539 561 0.97 10 13 0.0005 0.054 15.7 0.7 1 23 567 590 567 590 0.94 11 13 3.8 4.1e+02 3.4 3.4 1 23 596 618 596 618 0.95 12 13 0.81 88 5.6 0.6 6 23 631 649 624 649 0.87 13 13 0.0005 0.054 15.7 0.4 1 23 655 677 655 677 0.99
Sequence Information
- Coding Sequence
- ATGGCAAATCAGGAAGGCAATATTTGCCGGTTCTGTGATCACATCGGAACCAACACTTCTCTCCATGCTACAGcatattttgctgaaaatatcaCTTTGGCAGAAGTAGTTTCTAATGTTGCACAGCTGAACGTATCATCCCTGTTAGAAGCAGGAAGCCAATATGTTTGTACCGATGGTTGCCTTCCTCGGTTAGCGAATTGCTATTCATTCAAACAGCAAATATGTCGGGTGGAAGCGGCCAGGCGTGATACTGCGGTTAAGACTGAGAATTACGATAACGAAATGTCCGAACAAGAATACGAAGCTGAATTCTTGGAGTACGACGAAGAAAGTTGCGATAAACATAGCAAATCgttaaaatttgaaacaaataatCTGACGCTAGCAATGCCTTCCGGGGAACAAATAATAACCCGTTTAGAATTCGAAAACTTTgattattttgaattcaaaggaGAAACCTGTTGTGAATGCGGACTAATTGTAGACAATTCGTTACAACTACAGGAGCATATCGCAATGCACCATCAAACATCGACAACACATACGGTTACTCCAATTTCGTGCCCGGGttgtaaaaataattttgaatctGAGACTGATCTTCAAAGTCACATTGATTATTTTGTAGGGAAAGAACGTTATCTTTGTAAACTTTGTGGGCAAGTATTTTGTAAGAAAGAAGATCTTGTTGTTCATATGGAATCAGCTGAAACTCATAAATTACGAAAAGAAtcgtgtttaaaaaaaatggattttgtgAATAATGTGGAAAACCTCGTCGAACCTCCTGCTGTTGAAGGCCAAGACGTTGAGATTGAGTTTAGTACGCCGGAAACAGATTCCAGAACTAAATCAGTGCAGCATCAACAGTCTAGCCAACTACCCGATGAAAAATATATCAGTTCCATCTTAGATCACGAACAGTATCAAATAGTTCGGGTTGAGAATGCAGAACGATGTTGCGAGTGTgggattttttatgaaaattattaCCTTTTATTGCAACACGCCAACCGAGAACATAGGTCGGGAAAATCCCTCTCACCGAATAAAACATTCTGCGAGATCTGCTATGAACGGTTCAAAAGTCCATGGGCTCTTAAAGCGCACAGATCAAATAGCAGATTAGTCAACCAGCTGTATTACTGCAAATTGTGTCATGTTGCGTATACACGTAAATATCAtttaataaaacattttcaaactACCCCAAAGCACGAATTACCAAGGAACCTGCTGGAAACGATGCGATCAACGGTGTCTAAAAAAGCTAAGATTCTTAGCAAAGATAATTCAACGCCTATCGAACCGTCTTTTGCTTGCTGTTTCTTGAAATGTGCAAGCATTTTTGAAACCGAAGAACAGCTTCTATGTCACGTTGAGCAGCAACATGCACCACGTAGAAAAATACATCTAGTAGAGCGAACCAGTGACAGCAATGTCTGCAGTACATGTTTGCGAAATTTTAGTTCACAACAGCTCTTACTTCTTCATCGAAGTCGAGCGCTGAAAAAGATTCACATTTGCAGTTACTGTGCAGAAGCATTTTTGATTCCCAGTAAACTTCGCGAACATGAACAGTTAGTTCATTCAGATCACGTTCCTCAACATCCATGCGACCTATGTAACAAGACATTCCGAACCACTAATCTTTTGAAAATGCATCGCAGCACGCATGCACAGCAGCGAGATTTTGCATGCGATAAGTGTGGTGCCCAGTTTCGGTTTAGGTTTCAGCTGAAGAAACATGTCAATGGAGTTCATCCCACTAATTTTCCTTACGAGTGTAGattctgtgaaaaaaaattgtccactAAAGCGAAACATGATCTGCATTTGCGCTCCCACACCGGAGAAAAACCGTACATTTGCCGTTACGAACCATGCGGGAAGCAATTTTCTCATGTTACTGATCGGAAGCGCCACGAAATGGGAGTCCATACCGGAGAAAGACCTTACAAATGCGAACAGTGTACTGCTGCCTACATTCGAAAGCGTGAACTGTTGATACATTTGCAGAAGCACCAGCGACAGGTAACTTGTAGTGTAAATTCTTAg
- Protein Sequence
- MANQEGNICRFCDHIGTNTSLHATAYFAENITLAEVVSNVAQLNVSSLLEAGSQYVCTDGCLPRLANCYSFKQQICRVEAARRDTAVKTENYDNEMSEQEYEAEFLEYDEESCDKHSKSLKFETNNLTLAMPSGEQIITRLEFENFDYFEFKGETCCECGLIVDNSLQLQEHIAMHHQTSTTHTVTPISCPGCKNNFESETDLQSHIDYFVGKERYLCKLCGQVFCKKEDLVVHMESAETHKLRKESCLKKMDFVNNVENLVEPPAVEGQDVEIEFSTPETDSRTKSVQHQQSSQLPDEKYISSILDHEQYQIVRVENAERCCECGIFYENYYLLLQHANREHRSGKSLSPNKTFCEICYERFKSPWALKAHRSNSRLVNQLYYCKLCHVAYTRKYHLIKHFQTTPKHELPRNLLETMRSTVSKKAKILSKDNSTPIEPSFACCFLKCASIFETEEQLLCHVEQQHAPRRKIHLVERTSDSNVCSTCLRNFSSQQLLLLHRSRALKKIHICSYCAEAFLIPSKLREHEQLVHSDHVPQHPCDLCNKTFRTTNLLKMHRSTHAQQRDFACDKCGAQFRFRFQLKKHVNGVHPTNFPYECRFCEKKLSTKAKHDLHLRSHTGEKPYICRYEPCGKQFSHVTDRKRHEMGVHTGERPYKCEQCTAAYIRKRELLIHLQKHQRQVTCSVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -