Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:127956984-127959275[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.021 2.3 10.6 0.7 2 23 398 420 397 420 0.95

2 7 1.4e-05 0.0015 20.5 1.9 3 23 431 451 429 451 0.96

3 7 0.0089 0.97 11.7 3.1 2 23 456 477 455 477 0.96

4 7 0.12 13 8.2 0.3 1 23 483 505 483 505 0.98

5 7 2.1e-05 0.0023 19.9 4.7 1 23 511 533 511 533 0.99

6 7 0.00013 0.014 17.5 2.5 1 23 586 608 586 608 0.98

7 7 3e-06 0.00033 22.6 1.6 2 23 615 637 615 637 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.021	2.3	10.6	0.7	2	23	398	420	397	420	0.95
2	7	1.4e-05	0.0015	20.5	1.9	3	23	431	451	429	451	0.96
3	7	0.0089	0.97	11.7	3.1	2	23	456	477	455	477	0.96
4	7	0.12	13	8.2	0.3	1	23	483	505	483	505	0.98
5	7	2.1e-05	0.0023	19.9	4.7	1	23	511	533	511	533	0.99
6	7	0.00013	0.014	17.5	2.5	1	23	586	608	586	608	0.98
7	7	3e-06	0.00033	22.6	1.6	2	23	615	637	615	637	0.95

Sequence Information

Coding Sequence: ATGGGGAGTCATAGGGTACGAATGTGTCGGCTGTGCTTATCAACCACAGTAGTACTTCGctcaattttcacaatttttcgaAACCATAATTTAGTATTTATTATTCAAGATTACATCAAATTAGAGATCAAAGAAGATGATAGATTGCCAAAACTTATATGCAAATCGTGCGCTGTTAAACTCATTAGAATTAGAGAGAATGTATCACTATTTAAAGAAAGCGATCGAAAACTACGTGACAAACTTCGCGATGATGTTGGATTACCAGATGTAAACGACTTGCGACAGGACAAGAAGCGACGGTATACTCGccgtgaaaaaatattttacagtGGTTCGGACGATGACGTGGATAATCAAGCAAATGTTCCAGTCAAATTTGAAAAGAGAGATCTCGAATCACATGAACCTACCAACGAGCAATTGTTTGAATTCAACGAAGTTAAAGAGGAGATTTTAAGCAGCGACGTTGATGAAGATATTCCCCTAACAAGGCTTAGAAACTCTTTGAAAGCTGAAAACGCGACTAAAAAAGATTACAATTTAGCAAAACAGACATCTgagaattgcaaaacagaaaGTGATAAGACAACCATCATTTCTTATATAGACATAGAAGCAAAGAGCGATGATATAGCTTGTAATGAATTATATGATTTGATAGCAGAAAATGTGCAAAAATCAGATAAATATTCTGGTGATGAAGTTAAAATAACGAAAAATCGCCGACGGATAAAACAACAGGTAATATGCGAAAAAAGATTTACAAGGTGGCCTAGAAGACAAACGAGTCTGCTTAGAGATCATGCTGAAACGGGAAATCACAGAGATAATACGCTTGATCTTGTTACGGACGAACCAAAACAGGCAGACAGTACTGATTCGCCGGATGACACAATCTATAAAAAGAAAAGAGGTAGACCAAGACTAGTTGAAAAACAGCAAAAGAAGCAAACAGTTCGTACATTGAACAGTTTGCAGAAAAAACAAGAACCATTTCCATCCTTGCATGATTATAAATGTTATATTTGTAACAGTGATTCGTTGGGTTCAAGAAAAGCGATGATCGAACATTTCTCTGTTCACATTGATAAACTTCCATATACTTGTAAAGAGTGCGTTATGGAAACGGTCATTTTAACTCGTGTCCGTACGTTGAACAGTCATATGAAAATGCATGCTCAACCAGTAAAATGTGATTACTGTGATCGCCGCTACAGTAATGCTGCAGGAAAATACTATCACACACAGACATTTCATTTAGGAGGTGGTGCTCCTTGCTTGGTTAATTGTGAAGTTTGTGGTAAAACTTGTGGTTCACAATCTTCCTTGAAACAGCACATGAAATACCATACCACAAAACTGAAATGTAACAAATGTGACATGGTATTCAATCATCCTAACAAACGAAGAAATCACGAAAGACTACACGATGAAAATCGAGGATACGAATGTGTAGTATGCAAGAAGGTTTTACAAACAATTGAATCTTATGATGTTCATCTAAAAAAACATAGCCAAGAACGCAGCTATCAATGCCATCTGTGCCCAAAAAAATTCAACACTTCATGTAATTTAATTTTACATTTAAAGGTGCATGCTAAGAACGATAATTACAAACCAGCCAAGTCATGGGTCGAACATTATACTGTGCTGAGTCGTAATCCAATGCATTTTAAGTGTAACCACTGTGATCGCTATAATACAGATAAGGTGAATAACATGATATCACACCTCCAGGCCCATTTTAAAGAATATGAATGCGATCAATGTCAGCATAAGTTTGCTACAGCCAAGCAACTACGAGCACATTATACAACACACACTGGTGAAAAACCAGAGAAGTGCAAATACTGTGAAAAAGTATTTTCTACTAAAAACAATTTACGAATACATCTGAAAGCATCACATCCGGAATGGATCCCAAGACGACAACAGCAAGGTCAAGAGTCGCGGTTGCAGACAAATGTTCATCACTCACAAACTTCGATTGCACTTGAGCCAAATGCTTATGGAAATCTCTCAACTAGCGGAGTGCTTTTTAGTTCACAACTTGCACAAAGTAATGAATAA
Protein Sequence: MGSHRVRMCRLCLSTTVVLRSIFTIFRNHNLVFIIQDYIKLEIKEDDRLPKLICKSCAVKLIRIRENVSLFKESDRKLRDKLRDDVGLPDVNDLRQDKKRRYTRREKIFYSGSDDDVDNQANVPVKFEKRDLESHEPTNEQLFEFNEVKEEILSSDVDEDIPLTRLRNSLKAENATKKDYNLAKQTSENCKTESDKTTIISYIDIEAKSDDIACNELYDLIAENVQKSDKYSGDEVKITKNRRRIKQQVICEKRFTRWPRRQTSLLRDHAETGNHRDNTLDLVTDEPKQADSTDSPDDTIYKKKRGRPRLVEKQQKKQTVRTLNSLQKKQEPFPSLHDYKCYICNSDSLGSRKAMIEHFSVHIDKLPYTCKECVMETVILTRVRTLNSHMKMHAQPVKCDYCDRRYSNAAGKYYHTQTFHLGGGAPCLVNCEVCGKTCGSQSSLKQHMKYHTTKLKCNKCDMVFNHPNKRRNHERLHDENRGYECVVCKKVLQTIESYDVHLKKHSQERSYQCHLCPKKFNTSCNLILHLKVHAKNDNYKPAKSWVEHYTVLSRNPMHFKCNHCDRYNTDKVNNMISHLQAHFKEYECDQCQHKFATAKQLRAHYTTHTGEKPEKCKYCEKVFSTKNNLRIHLKASHPEWIPRRQQQGQESRLQTNVHHSQTSIALEPNAYGNLSTSGVLFSSQLAQSNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -