Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:11073884-11075466[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.075 8.2 8.8 2.4 2 23 157 179 156 179 0.91

2 10 0.024 2.6 10.4 0.2 2 21 194 213 193 214 0.94

3 10 0.00053 0.057 15.6 1.6 2 20 254 272 254 276 0.89

4 10 0.31 33 6.9 0.7 1 21 289 309 289 310 0.94

5 10 0.00016 0.017 17.2 0.4 1 23 318 340 318 340 0.95

6 10 5.8e-06 0.00063 21.7 1.7 1 23 346 368 346 368 0.98

7 10 1.1e-06 0.00012 24.0 1.2 1 23 375 397 375 397 0.97

8 10 0.0053 0.58 12.4 2.3 3 23 405 425 403 425 0.97

9 10 4e-05 0.0044 19.1 1.2 1 23 431 454 431 454 0.97

10 10 0.00035 0.038 16.1 1.0 1 23 460 483 460 483 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.075	8.2	8.8	2.4	2	23	157	179	156	179	0.91
2	10	0.024	2.6	10.4	0.2	2	21	194	213	193	214	0.94
3	10	0.00053	0.057	15.6	1.6	2	20	254	272	254	276	0.89
4	10	0.31	33	6.9	0.7	1	21	289	309	289	310	0.94
5	10	0.00016	0.017	17.2	0.4	1	23	318	340	318	340	0.95
6	10	5.8e-06	0.00063	21.7	1.7	1	23	346	368	346	368	0.98
7	10	1.1e-06	0.00012	24.0	1.2	1	23	375	397	375	397	0.97
8	10	0.0053	0.58	12.4	2.3	3	23	405	425	403	425	0.97
9	10	4e-05	0.0044	19.1	1.2	1	23	431	454	431	454	0.97
10	10	0.00035	0.038	16.1	1.0	1	23	460	483	460	483	0.95

Sequence Information

Coding Sequence: ATGCCCGAGAAGATCTGTCGTATCTGTGTGGAGACGGCTAAACCATCCCGCCTGGCCAGTTTGTTTGAGCAGACTGTCGAAAACCAACCGCTGTACGAAGTGCTGTCGATGGTGGGAAACGTGTCAATTGCGGTCGTCGATGGTCTCCCGAGGTTCTGCTGCAAACGGTGTTTGCGGAACGTTGAGATTGCCTATAAGCTACGAGTGTTGTGCCAAGAAAATGATCGTAAACTTCGAGAGGTATTGAGTGAGAAACTTCAACCTGTTGAGGGTGTAAAAGTAGATTTACGCAACATGAAGAAGAAGCGCAGCTGCCGAGGTCTAGAACTGAACACCCCTTCAGAAGAATCCAACAACTGCCCACAAAACCTTAAAATGGAAACCGAAGAACTTGAACAAAAAAGGGAACGCACAAAACAGAAAGGTAAATTTCCGGATGTTTTTGATGAAATCCCTGCTAGTAAACTTTGCTGCTGTGGTTGTCGGGCCAGATTTAGCACAGCCGAAGAACTGAAGCTCCATGCTGCAAGCAAACACGCGGTTAACATCATACCCGAACAGGAGCTCGGTGGTCGTTTGCAGTGTGGCGTTTGCTACAAGGTTTTGAACGATAAAAAAACCTACAACAACCATCAGCAAATCGGTAAGGTAAACTTCCGCTGCCGAGTTTGTGGTGATATTTTCACGGCCCGAATTCGTGTTTGCTTGCACTACGAACGACTGCACGGTCCGAACGCCTCTGTGTCGGATCAGTTTCGAACGTGCTGCGGTTGTGGGAAAAAGTTTGACTCTAACGATGATTTAAAGAACCACTCGGATGCGGTGCATCTGCCGGAAAAACCGGCTCCGAATGAAAAGCGACCGTTTGTGTGTGACGTCTGCTATCACAATTTTCCCAACGATTACCGGCTGTACGCGCATCAGTCCCGACGGATCAAGTACGCAAAGGTTCATCAGTGTACGCAGTGTGGCAAGACGTTCATCGGTGCGGGTCTTCTACGGGATCACGAAATCTATCACAGCGGAGAGAAGGCTTTCCAGTGTAAGCTTTGCCCGATGGCGTTCAGCAATAAGGACACCTTTCGGAGGCACGTTCAACGGCACAGAATGCCAGAGGATAAGTTTCAGTGCGAAGTTTGCGACCGACGCTTTAAGACGAGCAAAAATCTCAAGGAACACCTGATTCTACACACTGGCGAGCGGCCACTCGCCTGTCCGCATTGTCCGGCACGCTTCGTGCGTGACAGTTGCCTGaagtttcacattcgaacccacACCGGGCAGAAAAACTATCCCTGTCCACAGTGCGGTAAACAGTTTCCCTGCAGTTCCGATCTCAATCGGCACGTGCGACTGTTCCACGAAAGGCAAAGGCCCTATCCGTGCTTTTACTGCCCCAAGACGTACCCGAGAAAGGATTACCGCAAGAAACATGTCGAGAGTGTACATGCGACCGAACTGGCGCAGAATCCGGTTCCGCCGTTGGAACTGGCCGGTATTAAACGATGGGCGTGA
Protein Sequence: MPEKICRICVETAKPSRLASLFEQTVENQPLYEVLSMVGNVSIAVVDGLPRFCCKRCLRNVEIAYKLRVLCQENDRKLREVLSEKLQPVEGVKVDLRNMKKKRSCRGLELNTPSEESNNCPQNLKMETEELEQKRERTKQKGKFPDVFDEIPASKLCCCGCRARFSTAEELKLHAASKHAVNIIPEQELGGRLQCGVCYKVLNDKKTYNNHQQIGKVNFRCRVCGDIFTARIRVCLHYERLHGPNASVSDQFRTCCGCGKKFDSNDDLKNHSDAVHLPEKPAPNEKRPFVCDVCYHNFPNDYRLYAHQSRRIKYAKVHQCTQCGKTFIGAGLLRDHEIYHSGEKAFQCKLCPMAFSNKDTFRRHVQRHRMPEDKFQCEVCDRRFKTSKNLKEHLILHTGERPLACPHCPARFVRDSCLKFHIRTHTGQKNYPCPQCGKQFPCSSDLNRHVRLFHERQRPYPCFYCPKTYPRKDYRKKHVESVHATELAQNPVPPLELAGIKRWA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01525236;
90% Identity: iTF_01525236;
80% Identity: iTF_01525236;