Wsmi016306.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:201841752-201843758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 35 6.8 0.3 3 23 240 261 239 261 0.95 2 13 0.12 13 8.2 1.4 1 23 267 289 267 289 0.98 3 13 0.0031 0.33 13.2 0.4 1 23 296 319 296 319 0.97 4 13 0.11 12 8.3 0.9 2 23 336 357 335 357 0.90 5 13 1.8e-06 0.0002 23.3 1.1 2 23 364 385 364 385 0.98 6 13 0.0016 0.18 14.0 2.8 1 23 391 414 391 414 0.93 7 13 0.0025 0.27 13.4 1.4 1 23 420 443 420 443 0.96 8 13 0.013 1.4 11.2 0.5 2 23 461 483 461 483 0.96 9 13 0.0059 0.65 12.3 0.8 2 23 491 512 490 512 0.95 10 13 6.1 6.6e+02 2.8 1.0 3 23 518 539 517 539 0.91 11 13 3e-05 0.0033 19.5 1.2 1 23 545 567 545 567 0.94 12 13 0.00015 0.016 17.3 1.6 1 23 573 595 573 595 0.99 13 13 0.086 9.4 8.6 1.9 1 21 601 621 601 622 0.94
Sequence Information
- Coding Sequence
- ATGCCCTGTATTGTACCTACATGCCTCCGTGACGACAAAGAAATGATCATGATCCCGGAAGACCTAACACTCGCATCGAGATGGCTCGAGGCAATCGAAATGGGCTCTGGATACTCGATAGAAATAGCGAACAATGATTTTCAACCGGAAATATGCTGCATGCATTTCACGGACTTCGACACGAATGTCAGTAGCTATGAGGAACCGTCAACTTTTATACACCGCGATGAAACCTGCACCCAAATCTCCAGCTGCCGAATGTGTTTATCTTTTTACCCGACCCAAGATATGGTGCCATTGGAAAGTTGTATAGGCGAGCGAGAAATTGCGTCTCTTCTCGAATTGTTAAGAATCGATCTTCACGAAAATCAATTTCTTCGAATGATTTGTTTGGCATGCATTGCTAGGATAGAAATATTCGTTTCTCTGCACACAAATTTTACGCAATCGGAGAGAGCCTTTCAAGAATTGCTTCAGAAAAGTCGAGACGTGCAGTATCCTGCGTTTAAAATAGAGTATGTTTCACCACAGCTTGATACCGTTGCAGCTGAGTCGGAGTCGCACGCTAATCAGGATGCTAGTGATGAGTACATACCAATAATTTCCCATTGTCGTAACACCCGGAGTCGGAGTGTTAATCCAATGAAGATTTCTCTCAACAATGGTAAAAAACCCTCCGAGGAATCGCTCAGTTTGaaagagaaaatagatcgaaacTGTTACATATGTCATACGATTCAGCCAGATGCCAGTCAGCTGACGATACATCTTATGGTTAATCACACTTCCGAGATGGGCTATCGATGTGACGAATGTTCACTGGACTTTCCTTTGCTGCATGTATATAATCGCCACCTTAGCCGGCACGATGAGTCGCACAAGCCGTACAAATGCAGCGTTTGTGCAATGCGGTTTACGTCCAGTTATTgggtcaaaatacatgaaaacagAATTCATAATTCCAATCACAACGTGAAACGGGCATCGTTTAAAACTCGTAATGTGGTTTGTGATCAATGCGGGAAAGTTTGCGATACCCGTAGACTCAAAGAACACATCCAACAGGTGCATGAGAAATCCAGCCATCCAAAATGCAACATATGCGATAAAACATTCACCATCAAGCGTAGTCTCGAACGGCACATGTTGGTGCACACAAAGGAAAGACCCTACAGTTGTAACCAGTGTGACAAAACCTTCATACGTTTACTTGATTACCGCCACCACAAAAGCCTGGTGCACGAGGGTGTGAATCCGCACGTCTGTACCGAATGCAACGAAGAATTCAATAACTACCGATTGCTGTACAATCATAAGCAGGTAgtgcatttgaagaaaaaaattaaacagaagGGGCATTTCACCTACAAACAGTACGAAACTTGTAAGCTGTGTCGATCGAAATTTTCAAAGGGTAGTGAGCTGATAGCACACATTCAAAGTGAACACTCAGAACACTATCCAATGCTCAAATGTCCCCACTGTCCGAAAACGTTTTTGCTACCGTCGCGTCTGGCGAACCACAAGCAAATTCATTCGGATAGAAATATGTGCAAGAAATGCGGTGCCCAGCATATGAACAAAATGGCCCTCGAGTATCACATGGATATTAAACACCCCGACGGTCGGATGTATACGTGTTCTGATTGTGACACAACTTTCACCAGTCGCTTACAGCTTAAGCGGCACAGTGTCGTACATACCAAAGGAAAGCAGTTCCAGTGCGAGTATTGTGAAAAGTCCTTTTTGAGGAAGTTTCAACTAGCGCTCCATACAAGaatccaCACTGGGGAGAAACCCTTCGAGTGCGATGGGTGTTTGAGATGTTTTGGTGATGATAGGTCATTTCGCAAGCACAAAAAAATCTGCAAGATGCTGCTGAGTAGCTGA
- Protein Sequence
- MPCIVPTCLRDDKEMIMIPEDLTLASRWLEAIEMGSGYSIEIANNDFQPEICCMHFTDFDTNVSSYEEPSTFIHRDETCTQISSCRMCLSFYPTQDMVPLESCIGEREIASLLELLRIDLHENQFLRMICLACIARIEIFVSLHTNFTQSERAFQELLQKSRDVQYPAFKIEYVSPQLDTVAAESESHANQDASDEYIPIISHCRNTRSRSVNPMKISLNNGKKPSEESLSLKEKIDRNCYICHTIQPDASQLTIHLMVNHTSEMGYRCDECSLDFPLLHVYNRHLSRHDESHKPYKCSVCAMRFTSSYWVKIHENRIHNSNHNVKRASFKTRNVVCDQCGKVCDTRRLKEHIQQVHEKSSHPKCNICDKTFTIKRSLERHMLVHTKERPYSCNQCDKTFIRLLDYRHHKSLVHEGVNPHVCTECNEEFNNYRLLYNHKQVVHLKKKIKQKGHFTYKQYETCKLCRSKFSKGSELIAHIQSEHSEHYPMLKCPHCPKTFLLPSRLANHKQIHSDRNMCKKCGAQHMNKMALEYHMDIKHPDGRMYTCSDCDTTFTSRLQLKRHSVVHTKGKQFQCEYCEKSFLRKFQLALHTRIHTGEKPFECDGCLRCFGDDRSFRKHKKICKMLLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -