Wsmi006052.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- Zfx
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:71915070-71916796[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.84 91 5.5 0.6 1 23 77 101 77 102 0.92 2 12 0.0083 0.91 11.8 0.4 2 23 111 132 110 132 0.93 3 12 0.0025 0.27 13.5 4.0 2 23 141 162 140 163 0.94 4 12 0.098 11 8.4 0.3 2 23 222 244 221 244 0.95 5 12 0.0004 0.043 16.0 0.2 1 23 276 299 276 299 0.92 6 12 0.00011 0.012 17.7 3.8 1 23 307 329 307 329 0.99 7 12 1.5e-05 0.0016 20.5 5.0 1 23 337 359 337 360 0.95 8 12 0.00029 0.032 16.4 0.3 2 23 367 388 366 388 0.96 9 12 0.13 14 8.0 2.2 2 22 399 419 399 419 0.95 10 12 0.00025 0.027 16.6 0.3 2 23 427 449 426 449 0.96 11 12 0.0066 0.71 12.1 1.5 3 23 458 478 456 478 0.92 12 12 0.0003 0.032 16.4 3.7 1 23 484 507 484 507 0.98
Sequence Information
- Coding Sequence
- ATGTCTAAGAAACACCCAAAGTGTTTACTGTGTAACAGAGTTTCGGAAAACTTTCTTCGCGTATCGGACAATAGTAACGGAGAGAACGTGGAGGTTGTGCTTTTGAAACACTTTCCCTTTCAGGCGACGGACTTTTGGAACGAAATTGTTTGCTCCGTGTGCTGGAAAAAGATCGTCGACTTCCATGAGCTGTTCTGTGAGGTAGAGAAAAGATGGACTCTCGGCCGGTTTCGGTGCGAGCTTTGCGTAAACTCGAAGGCATTCAACAGCGACGGGGATTTGCAGATACATAATCTAATGCACCATTCGCAgaaggaaaataaaattttgaactgTGATCAATGCGTGAAAACGTTCGCTACCGAATGGCAGCTGTCCAGTCACAAAACCTGGCACCAGGAAGTGCTTTCCCTGAATATTTATTGCAATATTTGTAACAAACAatttgCTTCCATGCACACGAGAAATGCTCATATAAGAAAGCATCATACTGAAATTCCTACAGTAACCCCTGGCGCTTTTTCGGTGGAACCAACGAGCGCCGCCGATGGTCAGTTTGAAAGTATTTTGGAACCATCAGCGAAGGAAACAAATACTAAAAAAGCAAAATCTTCGGAAACGAAAGCCAGCGAAGATGAATTGATACGACGGTTTTGTAATCTATCTTGCCTGCAGTGCGAATACACAGGCGAAAATCTCTATCAACTTTTGAAGCATTATCAAAGCGAGCACGAAACTCGAGGATACGCCGAATGCTGCGGACAAAAGTTCACGAAAAAACCACGCTTGTTCAACCACTGCCAGCTGCACATCAATCCGGATATGTTCCGTTGTGAAGCATGCAATAAATCATTTGCCCAAAGTGAAGGCTTAGAGCAGCACAACCAGTGGGTACACACGCCAGACTCCGAGAAACCCTTTAAATGTAATATATGCGAGGCAGCCTTTTGCAAAAACTATCAGCTTAGTTACCACATGAAACGACATGTGGCAAAGGAGCAAAAGATTTTTCATTGCGATGACTGCAATAAGTCttttagtAATTCGCTACTGCTTCGAGCGCATCAACAAAAACACCACGGAGCGTCGAGTAACTGGGTGTGTGATGTTTGTGCGAAAGGTTTCGTGCATAAGGCTCTGCTGGAGAAACATCGTCTGTCCCACACGGCTGAAGGTGTAGCCAGTCTGATGCGCCAATGCAGTCATTGCAATAAGTGGCTCAAAAACAAGGACACCTACCAGAGTCACATTAAGCGTTGTATGGCGAGTGGTCCAGTCGAGTGTGACATCTGTGGTAAATTGTTTTCCCACGAACCTGGTTTGATGCAGCACAAGCGCATTATGCACATGAGGGAGCGCCCGTTAATGGCATGTCACTATTGCGACAAAACCTTCAAAGAAATACGACGTCTCAAAGAGCACGAAGCCAACCACCGGGGCGTCGTCCTGTATACCTGTCCGTACTGTCCAAAAACGAGTAACTCTAGCTCTACCATGCATAATCACAAAAAGACATCACACGCGGAACAGTGGGCCGCCAAGAGATCtacgtga
- Protein Sequence
- MSKKHPKCLLCNRVSENFLRVSDNSNGENVEVVLLKHFPFQATDFWNEIVCSVCWKKIVDFHELFCEVEKRWTLGRFRCELCVNSKAFNSDGDLQIHNLMHHSQKENKILNCDQCVKTFATEWQLSSHKTWHQEVLSLNIYCNICNKQFASMHTRNAHIRKHHTEIPTVTPGAFSVEPTSAADGQFESILEPSAKETNTKKAKSSETKASEDELIRRFCNLSCLQCEYTGENLYQLLKHYQSEHETRGYAECCGQKFTKKPRLFNHCQLHINPDMFRCEACNKSFAQSEGLEQHNQWVHTPDSEKPFKCNICEAAFCKNYQLSYHMKRHVAKEQKIFHCDDCNKSFSNSLLLRAHQQKHHGASSNWVCDVCAKGFVHKALLEKHRLSHTAEGVASLMRQCSHCNKWLKNKDTYQSHIKRCMASGPVECDICGKLFSHEPGLMQHKRIMHMRERPLMACHYCDKTFKEIRRLKEHEANHRGVVLYTCPYCPKTSNSSSTMHNHKKTSHAEQWAAKRST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -