Wsmi016307.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:201855025-201857109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 14 8.1 1.4 1 23 282 304 282 304 0.98 2 12 0.003 0.32 13.2 0.4 1 23 311 334 311 334 0.97 3 12 0.87 95 5.4 1.0 2 23 351 372 350 372 0.78 4 12 1.1e-06 0.00012 24.0 0.5 2 23 379 400 378 400 0.97 5 12 0.0012 0.14 14.4 3.4 1 23 406 429 406 429 0.93 6 12 0.014 1.6 11.0 2.1 1 23 435 458 435 458 0.95 7 12 0.0051 0.55 12.5 0.1 2 23 479 501 478 501 0.96 8 12 0.027 3 10.2 0.6 2 23 509 530 508 530 0.96 9 12 0.034 3.7 9.9 2.0 1 23 534 557 534 557 0.97 10 12 0.0027 0.29 13.4 0.7 1 23 563 585 563 585 0.93 11 12 2.5e-06 0.00027 22.9 0.5 1 23 591 613 591 613 0.99 12 12 0.068 7.4 8.9 3.2 1 21 619 639 619 640 0.94
Sequence Information
- Coding Sequence
- ATGCCTTGTATTGTGCCTACATGCCTTCGTAGCGACAAAGAAATGATGACGTTCCCAGAGGACCGAACACTCGCATCAAGATGGCTTGAGGCAATCGAAATGGGCTCTGGACACTCGATGGAATTGGCGGAAAATGAATGTCAACCGCAAATATGCAGCCTACATTTCATGTGTTTCGACAAGAATGGCGAAAACTACGAGGAACCGTCCAACTTCATACACCGCAATAAAAACTGCACACAAATTTCCGGCTGCCGAATGTGTTTATCTTTCCACCCGACCGAGGATATGGTATCCTTAAAAGGTACTCTAGGCGAGCAAAACATTGCCCCTCTTCTGGAATTGTTAGAAATAGATTTTCACGAAAATCAATTCCTTCGAATGATTTGTTTGGTATGCTTGGCTAGGATAGAAATattcgcttctctgcacacAAGCTTCAGGCAATCGGAGGAAGCCTTTCAAGAGTTGCTTCAGAAAAGCCGAAAAACGGAGTTCCTTGAGGTCAAAGTAGAGATTAGTTCACCGCAGTATGATACCGTTGGAGATAAATATTCTACGGAATCGGAGCCAAACTCCAACCAGGATGCTAGTGACGACGAGTACATTCCAAAAACTTCCCGGAATCGTAAAATCCAGGATCGTAAGATCCAGAACCGTAGCACCCGGAGTCGGAGTGTTAATCCTTTGAAGATTTCTTTCAACAATGATAAAAAACCATCCGAGAAATCGCTCAGTTCAAaggagaaaatagatcgaaacTGTTACATATGTGATACCATTCAACCAGATGCCAACGAGTTGATGATACATCTTGTGGTAAATCACACCTCCGGAAAGTGTTATCGATGTGACGAATGTTCACTGGATTTCCCTTTGCTGCATGTATATAATCGCCACCTTAGTCGGCACGATGATTCCAACAAACCGTATAAATGCAGCATTTGTGCAGTGAGATTCTCGTCCAGTTATTTGGTCAAAATACACGAAAACAGAGTTCATAATACCAACCACAACGTGAAACGGGCTTCGTTTAAAACGCATAATGTGGTTTGTGACCAATGCGGGAAGGTTTGCGATACCCGCAGGATTAAAGAACACATCCAAAAGGTTCATGAGAAATCGACTTATACGAAATGCACTATATGCGATAAAACATTCTCCATCAAGGCCAGTCTCGAACGCCACATGTTGGTACACACAAAAGAAAGACCCTACAGTTGTGACCAGTGTGATAAAACCTTCAAACGTTTACTTGATTACCGCCACCACAAAAGCTTGGTGCACGAGGGTGTAAATCCGCACGTTTGTGCCATATGCAACGAAGAATTTAATCACTACCGATTGCTGTACAATCATAAGCAGATAGTGCATCTGAAGAAAGGTGTCAAACCGAAGGGAGATCCTTCACGTTTAATCTACAAACAGTACGTACCGTGTAAACTGTGTCGAATGCAGTTTTCAAAGGGCAGTGAGCTGATAGCACACATTCAAAGTGAACACTCGGAAGACTATCCAGTGCTCGAATGTCCCCATTGTCCAGAGACGTTTTTGCTACCGTCCCGTCTATCGAAACACAAGCAAATccatttggaaaaatatatgtGCAAAATATGCGGTGTCCATCATGAGAACAAGAGGGCCCTCGAATCTCACATGGATACCAATCACTCAGACGGTCAGATGTTTCCGTGTTCTGACTGTTCtgcaaaatttgtgagtcgctTCAAGCTTCAGCGGCATAGTGTCGTACATACCAAAGGAAAGCAGTTCCAGTGCGAGTATTGTGAAAAATCCTTTGTGCAGAAGATTCAACTAGTTATCCATACGCGAATCCACACCGGGGAGAAACCCTTCGAGTGCGCCGGATGTTTTAAGCGTTTCAGTGACGATAGGACTTTTTGCAAGCACAAAAAAGTCTGCAAGGAGCTACTCAGCAAGATAGCTGAAGAATCGGAGAGCGTAGAATACGAATAA
- Protein Sequence
- MPCIVPTCLRSDKEMMTFPEDRTLASRWLEAIEMGSGHSMELAENECQPQICSLHFMCFDKNGENYEEPSNFIHRNKNCTQISGCRMCLSFHPTEDMVSLKGTLGEQNIAPLLELLEIDFHENQFLRMICLVCLARIEIFASLHTSFRQSEEAFQELLQKSRKTEFLEVKVEISSPQYDTVGDKYSTESEPNSNQDASDDEYIPKTSRNRKIQDRKIQNRSTRSRSVNPLKISFNNDKKPSEKSLSSKEKIDRNCYICDTIQPDANELMIHLVVNHTSGKCYRCDECSLDFPLLHVYNRHLSRHDDSNKPYKCSICAVRFSSSYLVKIHENRVHNTNHNVKRASFKTHNVVCDQCGKVCDTRRIKEHIQKVHEKSTYTKCTICDKTFSIKASLERHMLVHTKERPYSCDQCDKTFKRLLDYRHHKSLVHEGVNPHVCAICNEEFNHYRLLYNHKQIVHLKKGVKPKGDPSRLIYKQYVPCKLCRMQFSKGSELIAHIQSEHSEDYPVLECPHCPETFLLPSRLSKHKQIHLEKYMCKICGVHHENKRALESHMDTNHSDGQMFPCSDCSAKFVSRFKLQRHSVVHTKGKQFQCEYCEKSFVQKIQLVIHTRIHTGEKPFECAGCFKRFSDDRTFCKHKKVCKELLSKIAEESESVEYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -