Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:36185762-36188211[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.78 85 5.6 1.1 2 23 219 241 218 241 0.95

2 14 0.012 1.3 11.3 0.8 6 23 250 267 250 267 0.99

3 14 0.55 60 6.1 0.6 2 23 280 304 279 304 0.91

4 14 0.00069 0.075 15.2 0.2 1 23 312 334 312 334 0.97

5 14 0.002 0.21 13.8 2.6 2 23 343 364 342 365 0.94

6 14 0.011 1.2 11.4 0.1 2 23 443 465 442 465 0.96

7 14 0.0018 0.2 13.9 0.4 1 23 497 520 497 520 0.93

8 14 0.00011 0.012 17.7 0.9 1 23 528 550 528 550 0.98

9 14 4.7e-06 0.00052 22.0 0.2 1 23 558 581 558 581 0.96

10 14 0.00017 0.019 17.1 0.4 2 23 588 609 587 609 0.96

11 14 0.59 65 6.0 1.6 2 22 620 640 619 640 0.94

12 14 0.15 16 7.9 0.1 2 23 648 670 647 670 0.93

13 14 0.0051 0.56 12.5 0.7 1 23 676 698 676 698 0.92

14 14 0.0002 0.022 16.9 2.5 1 23 704 727 704 727 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.78	85	5.6	1.1	2	23	219	241	218	241	0.95
2	14	0.012	1.3	11.3	0.8	6	23	250	267	250	267	0.99
3	14	0.55	60	6.1	0.6	2	23	280	304	279	304	0.91
4	14	0.00069	0.075	15.2	0.2	1	23	312	334	312	334	0.97
5	14	0.002	0.21	13.8	2.6	2	23	343	364	342	365	0.94
6	14	0.011	1.2	11.4	0.1	2	23	443	465	442	465	0.96
7	14	0.0018	0.2	13.9	0.4	1	23	497	520	497	520	0.93
8	14	0.00011	0.012	17.7	0.9	1	23	528	550	528	550	0.98
9	14	4.7e-06	0.00052	22.0	0.2	1	23	558	581	558	581	0.96
10	14	0.00017	0.019	17.1	0.4	2	23	588	609	587	609	0.96
11	14	0.59	65	6.0	1.6	2	22	620	640	619	640	0.94
12	14	0.15	16	7.9	0.1	2	23	648	670	647	670	0.93
13	14	0.0051	0.56	12.5	0.7	1	23	676	698	676	698	0.92
14	14	0.0002	0.022	16.9	2.5	1	23	704	727	704	727	0.97

Sequence Information

Coding Sequence: ATGACGGAGAATTTGCAAGACTGCCTAACCTGTCGTAGAAAAACGGAAAACTTTCTAGGGATAGGTGACGAATCGAACGGAGAAAGTGTCGAGGCAATTCTTACTAAACACTTTTGGTTTAAGGCCATCGAGTACCGGAATCGGGTACTGTGTACAAGCTGTTGGGAAAAAATCGACGAATTTCACAAATTTTACTGCGAAGTTGAGGAAATATGGTGTCGGAAGACGGATTGTTTACTAGAAACCATGGTAAAAACGGAACAACTTTTCGACGCGAATGAAGTCCAGCAGGAATTGTTTGCCTGCGAATTGGTGAAAGAGGAGGAACGACCCACGAAAGGTAAACCCCAGCAAATCGTTACAACTGGTTGTGTTGAATCGGACACGGAATCAAATGAACTGGACCGGGATGCcggtgatgatgacgatgattcTAGTGATGATTCCTTGATCAAGGAGGAAAAAGAGAATTCAGAAGTAAAAGGTGAGGAATATACAACTGAAGATTCCGCTGAGGAATCATCGATTCCTATAGGGAAGCGACGCAGATCAACGACAAATCCGGCAGAGCCGGCTTGTAAGAAGCGGCATGTTCCTTCCCAGAAAAAAACGAATCTTGAACGTAATGGACTAATAGCAAAGCACGTACAACTGGTTTGTGATCTGTGCGAACAAGAATGCGAGACATTTTCCCGTTTATTGCTGCACTACAAAAAAGCGCACAAAATTCAAGGCTACGTAACGTGTTGCGATCGTACATTCCAGAAAAAATCCGCACTGTACGATCACTTGCGGCGACACGAAGCCGGTACACCCGATTACTCAGAGCCGCACTTGCGGTGCGATTTATGTGACTCCTCAAAGGCCTTCAAAGACGAGGAGGGACTTCAGCTGCACAAAGTTATATGCCACTCCAAGCAGGAGGAGAAAATTTATAAATGCAATCAGTGTGACAAAGCTTTCGGCAGCGAATGGTTGCTGTCCGGGCACCGGAACTGGCATCAGAATGTCGAAAGTTTGAACATTCGTTGCGACAAGTGCAATAAGTATTTCAATTCGATCCGTACTTTAAACACCCACGTCCGAGCGCATCATGCTGATCCAGCTTCGAACTGTCTTGTCAATCATGCAAATAATCCGGTAGAGTTGAATCCAACGGACAGTCTAGCAAACAATTCCGAGCATGTGTCACTAGCAGGAAATCCCCTTACAGGCCTGCCGGATGTGCAGAAACCAAGTGTAACATCGGCTCCACCCAAAAAAGCTCTCAAGTCTGCCGATGAGGTTGCGAAGGAGGACCAACTGATTCGCCAGTTCTGTACGCTGATATGTGAAAAATGTGAGTACGCCGGCGAGAATTACTATCAGCTGGAAAAACACTACAAAACTGCGCATAACATGCGTGGTTACGCCATTTGTTGTGGTCGCAAGTTTTGCAAAAAACGTCGACTGTACGAGCATTGCCAGCGGCATATAAATCCGGACATGTTTCGGTGTGAGCCATGCAACAAATCATTCACTGAAAGTGACGGTCTGGAGAAACACAACAAGTGGGTTCACACACCCGACTCGGAAAAGCCGTTTAAGTGTGAAATTTGTGATGCGGCTTTCTACAAAGATTATCTGCTGCGTAATCATATGAAGTATCATATTTCGATGGAGCAAAAAATCTTCAGCTGTAAAGATTGCGACAAATCGTTTGGAACAGCCGTGCTACTGAGAGCTCACCAGCAGAACATCCACGGAGCCGCCTCAAGTTGGGTGTGTGATATTTGCGCTAAAGGATTCGTGCACAAATCGTTGCTGGAAACACATCGCCTCTCCCATTCGGCTGAAGGTGCTGCCAGTCTGAAGAAGCAGTGTGAAAACTGCAAGAAGTGGCTCAAGAATAAAGATACATACCAGAATCACCTGAAGCGCTGCTTGGCCGGTGGTCCAGTTACGTGTGATATTTGCGGGAAGGAGGCAGTCAACGAACTGGCGCTGGCTAGTCACAAACGCTTCAACCACGAGGAACGCCCTGGTTTCGCCTGCAGCTACTGTGGCAAACAGTTCAAGCGAATACTGCGCCTGAAGGAGCACGAGGCAAACCACAGGGGCGAGGTGCTATACTCCTGTCCGTACTGTCCGCGTACTTGCAATTCTAGCTCCAACATGTACACCCACAAAAAGGTCGCCCACCCGGAGCTATGGGCAGCTAAGGTGGCGGAGCGTTTCTACAAGCGGTAG
Protein Sequence: MTENLQDCLTCRRKTENFLGIGDESNGESVEAILTKHFWFKAIEYRNRVLCTSCWEKIDEFHKFYCEVEEIWCRKTDCLLETMVKTEQLFDANEVQQELFACELVKEEERPTKGKPQQIVTTGCVESDTESNELDRDAGDDDDDSSDDSLIKEEKENSEVKGEEYTTEDSAEESSIPIGKRRRSTTNPAEPACKKRHVPSQKKTNLERNGLIAKHVQLVCDLCEQECETFSRLLLHYKKAHKIQGYVTCCDRTFQKKSALYDHLRRHEAGTPDYSEPHLRCDLCDSSKAFKDEEGLQLHKVICHSKQEEKIYKCNQCDKAFGSEWLLSGHRNWHQNVESLNIRCDKCNKYFNSIRTLNTHVRAHHADPASNCLVNHANNPVELNPTDSLANNSEHVSLAGNPLTGLPDVQKPSVTSAPPKKALKSADEVAKEDQLIRQFCTLICEKCEYAGENYYQLEKHYKTAHNMRGYAICCGRKFCKKRRLYEHCQRHINPDMFRCEPCNKSFTESDGLEKHNKWVHTPDSEKPFKCEICDAAFYKDYLLRNHMKYHISMEQKIFSCKDCDKSFGTAVLLRAHQQNIHGAASSWVCDICAKGFVHKSLLETHRLSHSAEGAASLKKQCENCKKWLKNKDTYQNHLKRCLAGGPVTCDICGKEAVNELALASHKRFNHEERPGFACSYCGKQFKRILRLKEHEANHRGEVLYSCPYCPRTCNSSSNMYTHKKVAHPELWAAKVAERFYKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -