Wsmi040944.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:73341143-73343547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0086 0.94 11.8 2.7 2 23 151 173 151 173 0.93 2 16 0.16 17 7.8 0.3 2 20 187 205 186 206 0.94 3 16 0.00077 0.084 15.1 2.8 2 23 216 238 215 238 0.96 4 16 0.039 4.2 9.7 0.2 1 21 278 298 278 299 0.95 5 16 0.00082 0.089 15.0 0.7 2 23 321 343 320 343 0.95 6 16 0.0013 0.14 14.3 0.2 2 21 361 380 360 381 0.93 7 16 0.044 4.8 9.5 0.5 1 23 388 410 388 410 0.97 8 16 0.02 2.1 10.6 0.6 1 23 416 439 416 439 0.89 9 16 0.00029 0.031 16.4 0.7 1 21 457 477 457 478 0.96 10 16 0.00016 0.017 17.2 0.2 1 23 485 507 485 507 0.97 11 16 0.073 7.9 8.8 0.9 1 12 513 524 513 526 0.90 12 16 2.3e-05 0.0026 19.8 1.4 1 23 541 563 541 563 0.98 13 16 8.1e-06 0.00089 21.3 5.0 1 23 569 591 569 591 0.98 14 16 0.0051 0.55 12.5 1.0 1 23 597 619 597 619 0.97 15 16 0.15 16 7.9 1.7 1 23 625 647 625 647 0.96 16 16 0.0021 0.23 13.7 5.4 1 23 655 678 655 678 0.96
Sequence Information
- Coding Sequence
- ATGGAGATTTCGGAAAATATTTGTCGCATATGTTTAGCCGGTGGCACAACGGACATTGATTGTCTCATGGTTGACATATTTGAGGAAAAGAAGGAATTTTCCATCCCAGATGTTTTGCAAATTATATGTGGCTTAGAGGTATCTGAAGAAAGTCAACTCCCTAGACTTATTTGCGTTATATGTTACTCGCGACTAGCAGATGCATATAACTTACGAGAGCAATGCCGGCAAGCACACGAAACGCTCGTTGTTATGTTTAATAATACGAGAGATAGCGGCAAGTGTGAAGAAAATGAACAAGATGGCATGTTCGATATAGAGTATCTAGATGATCCAGAAGAAGATGTTCAAGAGACCGGAGAAGAGATTACGGAAATAAAAGAGGAACTGGTCGAAGACATGTGTGCGATAGACATTCAGGACACCGTTATTGAAGATGAACTCGTTAATCGATGCTGTGGGTGTGATAAATCTTACAAAACCGAACTAGAGCTAAGAAAACATTCAATTCGTTTACATCGTCGCAATCAAATAGATACTACCGAGGAAGGAAAGGTGCAGTGTAATGTGTGCTTTGGAAACTTCAGCAGTGCTTACAAATTAAAGATTCACAAGACTGGAAAGAATAATTTAAAATCACTCCAGAAATGTAATTATTGCGGCTGCATTTTTTTCTCCAGCAGCGGTCTTCTGAATCACCAAAAGTTGTTTCATACGGACAAGCTCTTCAAATGTTGCAGATGTGATTTCAGCAGTCTAGAGATTAGTAAACTTTTGCTGCATGTAGAAGAACATAGAGAAGTGAATCCTTCAAAGTTTCAAGCATCGCGATATCAATGTAATCTGTGCCTAACACGATTTGAAAACGCTGAAGATGTAAGAACTCATGAGCGCTATCCATATCggaaatttaaaactaagcAAAGTAAATCAGAAAATAGCATCGATTTTAACGTAATTCGTTGCTGTGGTTGTCCTAAAATCTTTAACTCTACTGCCGATTTGCGCGACCACCAGGAAAAAGTTCACTTTCCGCAACGAACGATATCGACCGCTAGTCTGGAAGGTGAGTTGTCTATTGAATGTGGGGGCTGCTATAGAACGTTCCGAAGTGATAGTATGCTACAAAAACACCTTCAACGCGCTGCAAAAAGAAAACTTTACGCTTGTAGTAAGTGCAGCGTTTCACGACGCACTTTGAAGGAATTGAAGGAGCATGAAGCTACTCATATGGGAAGAGGGGCTTTTATCTGTTGTGGATGTCGTAAGGGCTTTGAAACGCAGGATGCCTTAGATAATCACTCACTAGAGATTCATGCCAAACGACCAAAGATTTACCATAACGACGCATCGGATACGGAGAGACCTTTTGAATGCCCTATATGCTACCGGCGGTACAAAACGTCGAGAGATCTTCGAGGTCACCAACGATACGTTTACTACGATAAGGCTCATATGTGCGAAATTTGCGGAAAAGGATTCGCTCAGGAAAGTATACTCACAGTGCATATGGCACGGCACAAATCCGAAGCTAATTTTCCTTGTCCAATCTGTGgcaaaaaatataaacatgAAACGATTGTTCGCGATTGTATCACTCGCCATAATAGACCCAAGGAACATAAGTGCAAAATCTGTAACGTCAGATTTTCAGGAGCTTCAAATCTTTATTCGCATATGATATCGCACTCGGAAGATCGCCGTTATAAGTGCGACATTTGTGGTCAAAAGTTCAAACGAAGCTTTCACCTTAGAAAACACAAAAGTATCCATACTAGCGAAAGGAACTATCCGTGTAGATACTGCCCGTCGCGGTTCAGCTCCACGACTGAGCTATACAAGCACGAGATCCGTCACACAGGACAATATCCATATGAATGCAGCTTATGCAGCAAAAAGCTTACGACACGTCAGGTCTACATAAAACACTTCGAAAGTCATATCGAAGACCGTCACAAAATATTTTGTTGTGAAATTTGCCCACAACGCTTCAGTCAGAACCACTTCTTGTCGAATCACATAAAATACACACATCGGATTGAGCCGCAAGACAAAAACTGGAACGAAAAGTTCAACCGGCGGGGGCCCAGAAGAACAAAAGGAGGTTCCAGAGTAGCTGGAGTTAGGTTTATAGATACTGCAGGAGCTTGTGAACCAGAAGAAACAACTCCGGAAATAGAAACGATGTCAGGTTTGGAAATAGTAGACGAGGAAGTAGAGTTGGAGAATGATTGTGAATAG
- Protein Sequence
- MEISENICRICLAGGTTDIDCLMVDIFEEKKEFSIPDVLQIICGLEVSEESQLPRLICVICYSRLADAYNLREQCRQAHETLVVMFNNTRDSGKCEENEQDGMFDIEYLDDPEEDVQETGEEITEIKEELVEDMCAIDIQDTVIEDELVNRCCGCDKSYKTELELRKHSIRLHRRNQIDTTEEGKVQCNVCFGNFSSAYKLKIHKTGKNNLKSLQKCNYCGCIFFSSSGLLNHQKLFHTDKLFKCCRCDFSSLEISKLLLHVEEHREVNPSKFQASRYQCNLCLTRFENAEDVRTHERYPYRKFKTKQSKSENSIDFNVIRCCGCPKIFNSTADLRDHQEKVHFPQRTISTASLEGELSIECGGCYRTFRSDSMLQKHLQRAAKRKLYACSKCSVSRRTLKELKEHEATHMGRGAFICCGCRKGFETQDALDNHSLEIHAKRPKIYHNDASDTERPFECPICYRRYKTSRDLRGHQRYVYYDKAHMCEICGKGFAQESILTVHMARHKSEANFPCPICGKKYKHETIVRDCITRHNRPKEHKCKICNVRFSGASNLYSHMISHSEDRRYKCDICGQKFKRSFHLRKHKSIHTSERNYPCRYCPSRFSSTTELYKHEIRHTGQYPYECSLCSKKLTTRQVYIKHFESHIEDRHKIFCCEICPQRFSQNHFLSNHIKYTHRIEPQDKNWNEKFNRRGPRRTKGGSRVAGVRFIDTAGACEPEETTPEIETMSGLEIVDEEVELENDCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -