Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:67258201-67262048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.2e-05 0.0035 19.4 0.8 1 23 177 199 177 199 0.97

2 15 0.024 2.6 10.4 3.0 1 23 205 227 205 227 0.97

3 15 3.4e-05 0.0037 19.3 0.2 1 23 349 371 349 371 0.98

4 15 0.13 15 8.0 0.4 1 23 377 400 377 400 0.97

5 15 0.00012 0.013 17.6 0.3 1 23 437 460 437 460 0.96

6 15 0.028 3.1 10.1 0.0 2 23 508 529 507 529 0.94

7 15 0.49 54 6.2 2.6 1 23 535 558 535 558 0.94

8 15 0.024 2.7 10.3 0.9 2 19 566 583 565 584 0.94

9 15 0.00027 0.029 16.5 6.6 1 23 597 619 597 619 0.95

10 15 0.2 22 7.4 0.5 2 23 625 646 624 646 0.97

11 15 1.4e-05 0.0016 20.5 0.3 1 23 652 674 652 674 0.98

12 15 0.0092 1 11.7 0.2 3 23 682 702 680 702 0.97

13 15 0.00067 0.073 15.2 0.5 3 23 710 730 708 731 0.95

14 15 0.016 1.7 10.9 0.2 1 23 745 767 745 767 0.96

15 15 0.021 2.3 10.6 0.1 1 20 1212 1231 1212 1234 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.2e-05	0.0035	19.4	0.8	1	23	177	199	177	199	0.97
2	15	0.024	2.6	10.4	3.0	1	23	205	227	205	227	0.97
3	15	3.4e-05	0.0037	19.3	0.2	1	23	349	371	349	371	0.98
4	15	0.13	15	8.0	0.4	1	23	377	400	377	400	0.97
5	15	0.00012	0.013	17.6	0.3	1	23	437	460	437	460	0.96
6	15	0.028	3.1	10.1	0.0	2	23	508	529	507	529	0.94
7	15	0.49	54	6.2	2.6	1	23	535	558	535	558	0.94
8	15	0.024	2.7	10.3	0.9	2	19	566	583	565	584	0.94
9	15	0.00027	0.029	16.5	6.6	1	23	597	619	597	619	0.95
10	15	0.2	22	7.4	0.5	2	23	625	646	624	646	0.97
11	15	1.4e-05	0.0016	20.5	0.3	1	23	652	674	652	674	0.98
12	15	0.0092	1	11.7	0.2	3	23	682	702	680	702	0.97
13	15	0.00067	0.073	15.2	0.5	3	23	710	730	708	731	0.95
14	15	0.016	1.7	10.9	0.2	1	23	745	767	745	767	0.96
15	15	0.021	2.3	10.6	0.1	1	20	1212	1231	1212	1234	0.93

Sequence Information

Coding Sequence: ATGGATAAAACCACATTCACACTTTGGGACCCGTCCCAACCGAATGCCAAAATGCGTATAATTAATATACCTGGTCAAGGCCATACGCAATATTTAGAGTCCGTTTCtgaaatcagtaaaattgcaagGCAACCGGCAACTAATGAACAAATAATTCTACAAACTCACGATGGACAAGAGTTTCTCGTGGACGAAAATGAAATTGATCGGATCGATCAAATTCCACCTGAAAATTTAATCTATATGTCTGCTGATGATGGATCTTTTATCCAAGGTGAGGTCGTCCATGTTCAAGCCGATGGTCAGCAAATTCATGAAGAGTTAGCCGTTCAACAGAATCAGCAGCAATACATGGAGTGTGAAGTAACAGAAGAGGTCATTACAGATGATTGGGTTCAGACAGACGGACAAGATTGTGTGCAGGTTACTGTTGATCAGTTGGGTGCAACGACCGTGATTGGGTCTGCTGAAGACGAAGAAACGGTTCCGCTTCCAACGGATCAGGATGAGTACACAACATCTCGACCCTATCCGTGTGATTTCTGTAGCAGACGCTTCCGCAAAAAGGCAAATTTGATGAATCATATGATTGCCCATTCGAACGACAGACCGCACGTGTGTAATTTATGCGGTGCTCGCTATATGAGGCGCTGTGATCTGCTGAACCACCTGAAACTGCATGCCTATTCGACGGATGATCATGAAGAACCGATCAGGAGCGACCCGGAAGACGACTACGACTATGAACTATCAAATTCCCCGCCAACAAGCCCAGATCAGCACTCGCCCACTCTAGAAGACGACGATGATGATTTGCTGGTCCCGGCTCCATCACAATATCGTACACCTAAACCGAAACAAATTAGGAAACCCCGTGCCAAAAACAGTGCGAGTGCCGCAAAGTTAAGCAAAAAACCATCTACCTCATCATCTAACAATCGACCGCGCCAAATGCagcaaaaatttgataattcatttaactcttcaattgaACCGTTCGTTAATCTTCCCCCGCGATTTCCAGTCACCGATGAACGTAAGCCTTTCGTCTGCCAGCATTGTGGAATTTCATTTGCACGGGAAAAAGCTCTTGCATCACATGCTCGAGTACACGGAGGTGATTGTCAATTTGAGTGTGAATCTTGCGGTGACCGGTTCTGGGATAAAACCATGCTACAAGATCACATTCGTCAACGTCATGCTGCTAATTTGGTAGTAACTGGACCAAAAGCAACGAAGAGTAGTTACACTTTGTTGCAACCGGAAATCGAAAACCATACCTTAGAAACCGAGAAcgcaaaacaaaatttctattgtGACAGTTGCGGAGCAATATTTCCAAAACCAGATCAGTTGAAACGTCACATAAAACAAACCCATAGTAGTAAAGAACAGATGCTGGAACCAATAAGTCAAATAGTGCGGCAAAGGCAACAACATAGCCAACAAATTATTAATTTCGATGGCGAGGAAGACGAAGATCAGGCTCAGTACGACGAAGTTGAATCGCAAACACCGTTGTCTTGTAACGTATGCGGTGAAAGATTTGCCGAAGCTCTAGACTTATTAGCTCACGCAGAGGTGCACACACGGTTCGAGCCGCACAGATGTCAACTATGTAGGGAAACATTCATCGACGAAAAAACGATCAAAGAACATGTACAACACATCCACAAAGCGGACCTCACTGATACTAGCTGTGTAGTTTGCGGCAAATCTTGCAGAACTCACGCTGCACTACTCAAGCACGCTTGGGAGCACTCACGAGAACGTTTAAATTACGGAACACATTGTTGTTCTAAATGTGGCAAGACGTTCTACAACAAGGCTCGCCTAAAACGGCACATGGTTTCCCACCGGAATAAATCAGTCAAATGTGAAGTTTGCCTGGAGGAGTTTCCGGACGGGAGAAGTTTAATGAACCATCGACATTCGCACACTAAGTCGCGTCAGTTTCCGTGCAATGTATGTGGTAAAACATTTGGATCTCGTTCATCCCAGCAGATCCACTTGAGAATTCATTCTGGCGAACGACCTTACGGTTGCAGATTTTGCTGGAAAGCTTTCGCTGACGGAGGAACATTGAGAAAACACGAACGTGTCCATACTGGCGAAAAACCGTACGGTTGCTCTGTCTGCCCTCGCGCATTTAATCAACGTGTTGTGTTACGAGAGCACATTCGTTCCCATCACTCTGCGCCGGATTCAAAGCAAGGAACCGCGACACAGCCATATTTCTGCTCCGTTTGTACTCAGCTATTCGAATCATCGGCTGAACTGATACAACATCTGATTCAACATAGTGATCTGAACACAGCAATGAAGCGACAACCGCCAACGTTTCCGCGAAAGTACAAAAGAAGGAAAAAGCTAAAGTCTTCGGATGGTGAAAAACAAACTCCTCCAAAGTGGAAAAAGAAGAGCAACATGAGTCGCATAGAGGAGGCTGTCAGTGACGGTGTTACGGAGGATGAAGATCCACTAAAAAATCCAGCCGAAATATTACTTGAATATGGAACAGGAAACTGCAGCAAAAAGCTTATTGCGTCTCCGAAATATATCAACTCGTACGAACTGCTAGCATCTACATCAGGCATTACCCACGCGAAGCCTGGCAATCTGGACGACAGTGGAATTAATCTGTTGAGTGATGTAGTTCTAATTAACAGCCcttctactactgtagatacCAAATTTAGACCCGACGTATCGGAATCACCTAAACGTCGGGGTGGAAAACAGCCATCAACAATAGCGAATTTTCACACCATCTTAGGTCAACCAAGTACTTCAGCAAGCAATTCGCGCCCTCGAATGATACATACACAAAAGACTCGAGTATCCGCTACCGATGGCAAGCGTAACACTAAAACTATTATAACGAAAGATATTAAATGTAGTCCCGAGAGTAAGCAATATTCTACGTTGGAGTTCAAAAGAGCTAAAAGCCGTTCCGTAGCAACGTACCAAGAAATCCCATCCGACAAGATTTCATCGGAAAGTTTTCCCCTGTTGGATGACGGTTGTGAAGATGACTGTGATGGCGATGAAGAACCACAGGACGATGCTTTATCACCTTCAATAACAGAGATCGATCGGAAGCAGGACGTACCAGCATACGAAGACCTGCTCAACCAAAACCTTCTTATGGAGATATCGCGTAAGGATAAATACATTGATAAATATAATAGTGATATTGTCAACGACTTAGAGGAAATTCTGCGATCTCCAATTAAAAACGCCACCAACAATGTGCCACCGACTGTAATAATGGCCACTCCTAAAACTAGTCACAGCCAACAGTATGATCCTGTAGCGGAAAAGCAGGAAGAGAAAAAACCAACCAAGCTAATGAAATACAGCAAATCAAACGACCATCATTCGCTAACATCAATCTTACGAAGTCAACGCCTGACACGTCGGCAGTTGGAACGAGAGGTTAACTTTTTACGGGAAGCGTATGGTACGGACTCGATTACCATCAAGCAGGAGAAAGACAGCCCCGATAAACTGTCGACCATGTTATTGAACGACGTACAGCCAACTTCGTCAACATTAGTCAACCCGAAACAAGAGCCATTACAGAACCTACCGATAAGTGAGGCACTGCTGGAAGCTCCCGAACCCGAGCGGTTTGAATGTGAAATGTGCTTCGCGACATTCGAGGACAGATCCCAGCTGTTGCTGCATGTGCCGGTTCACATTTAA
Protein Sequence: MDKTTFTLWDPSQPNAKMRIINIPGQGHTQYLESVSEISKIARQPATNEQIILQTHDGQEFLVDENEIDRIDQIPPENLIYMSADDGSFIQGEVVHVQADGQQIHEELAVQQNQQQYMECEVTEEVITDDWVQTDGQDCVQVTVDQLGATTVIGSAEDEETVPLPTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMIAHSNDRPHVCNLCGARYMRRCDLLNHLKLHAYSTDDHEEPIRSDPEDDYDYELSNSPPTSPDQHSPTLEDDDDDLLVPAPSQYRTPKPKQIRKPRAKNSASAAKLSKKPSTSSSNNRPRQMQQKFDNSFNSSIEPFVNLPPRFPVTDERKPFVCQHCGISFAREKALASHARVHGGDCQFECESCGDRFWDKTMLQDHIRQRHAANLVVTGPKATKSSYTLLQPEIENHTLETENAKQNFYCDSCGAIFPKPDQLKRHIKQTHSSKEQMLEPISQIVRQRQQHSQQIINFDGEEDEDQAQYDEVESQTPLSCNVCGERFAEALDLLAHAEVHTRFEPHRCQLCRETFIDEKTIKEHVQHIHKADLTDTSCVVCGKSCRTHAALLKHAWEHSRERLNYGTHCCSKCGKTFYNKARLKRHMVSHRNKSVKCEVCLEEFPDGRSLMNHRHSHTKSRQFPCNVCGKTFGSRSSQQIHLRIHSGERPYGCRFCWKAFADGGTLRKHERVHTGEKPYGCSVCPRAFNQRVVLREHIRSHHSAPDSKQGTATQPYFCSVCTQLFESSAELIQHLIQHSDLNTAMKRQPPTFPRKYKRRKKLKSSDGEKQTPPKWKKKSNMSRIEEAVSDGVTEDEDPLKNPAEILLEYGTGNCSKKLIASPKYINSYELLASTSGITHAKPGNLDDSGINLLSDVVLINSPSTTVDTKFRPDVSESPKRRGGKQPSTIANFHTILGQPSTSASNSRPRMIHTQKTRVSATDGKRNTKTIITKDIKCSPESKQYSTLEFKRAKSRSVATYQEIPSDKISSESFPLLDDGCEDDCDGDEEPQDDALSPSITEIDRKQDVPAYEDLLNQNLLMEISRKDKYIDKYNSDIVNDLEEILRSPIKNATNNVPPTVIMATPKTSHSQQYDPVAEKQEEKKPTKLMKYSKSNDHHSLTSILRSQRLTRRQLEREVNFLREAYGTDSITIKQEKDSPDKLSTMLLNDVQPTSSTLVNPKQEPLQNLPISEALLEAPEPERFECEMCFATFEDRSQLLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -