Wsmi055853.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:275859408-275887008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.6e-08 9.3e-06 27.5 1.3 2 23 60 81 60 81 0.97 2 11 2.1e-07 2.3e-05 26.3 0.5 1 23 87 109 87 109 0.98 3 11 2.2e-05 0.0024 19.9 0.4 1 23 115 137 115 137 0.96 4 11 3.9e-05 0.0042 19.1 0.7 5 23 149 167 143 168 0.90 5 11 4.3e-05 0.0047 19.0 0.3 1 23 173 196 173 196 0.96 6 11 0.0012 0.13 14.5 3.3 1 23 202 225 202 225 0.97 7 11 0.00011 0.012 17.7 2.6 1 23 231 254 231 254 0.95 8 11 0.00018 0.019 17.1 0.5 1 23 257 279 257 279 0.97 9 11 7.9e-05 0.0087 18.2 1.0 2 23 286 310 285 310 0.96 10 11 0.0041 0.45 12.8 5.6 1 23 335 360 335 360 0.95 11 11 0.0021 0.23 13.7 0.6 2 23 540 562 539 562 0.95
Sequence Information
- Coding Sequence
- ATGATGCCGAACTTCTACGATCATTCACGCCCCACTATGGTCCCAACTAGCTCCGCCATGCTAGGACCTCCGACCAATAGTGGGGAGAATAATTCGAAAAAGCAACACATTATTCCATTCGATTTAGAAGCAACCCTTCAAGCCGTGGATaaTGAAGTACTGGAGGGCGAAGAAGGTAGTTGTCCCATTTGCAATAAAACTtttagtaggaaatcatcgctTCTGAATCACATACGAAATCACACCGCTGAGAAGAAATACATTTGCGAGTACTGTCAGAAAGGTTTTTCTCAGCAGGCGAATCTTCGCAACCATGTTAGAATTCATACCAACGAGCGACCGTACGTTTGCATAGATTGCGGTAAGGCATTTACTCAAATCACGAATCTGAACAACCACAGGCGGTTACACACCGGCGAAAGGCCTTACGTGTGCATCGAAGCCAACTGCGGTCGCTCCTTCGCACAAGTAACCAACTTGAACAATCACATGAAAACGCACCACAAAACCCAACAGTACGTATGCAATCAGTGTCCGAGACGATTTTATCAAGCGACACAGTTGAATCTTCATTTGATCTCGGAACATAGTACGACGAAAACCTTTTTCTGTCCGCAATGTCCCGACAAGCGTTTCAAGTCACAATCACTTTTTCAACACCACCTGAAAATCCACGGCTCGAACTTTGGCTTTCCGTGTTCGAAGTGCGACGAAAGGTTCATTCAGGAATCGCATCTCATACTGCACATGACGCATCAGCACGGCGATTATGCGTGCAGCATGTGCTCGATGACGTTCAACGATGAAGTTTTACTGAAAAAGCATGTCCAAAGGCACTTGGACGGAAGGTATCTCACCTGCCCGGTGCTCGGGTGCAACGAGGGATTCACCATGAAAAACCATCTCACCAAGCACATGCAAATGCGCCATCCGGCGATTGATCTCAAGAAGGGTTCTTCCAGCACAGGAGCTATACTTGATACGGCCAAACGGCCGCCCAAGCACTGCTGCCATTACTTCAATTGCAACGAATCGTTCGACACTTCCGATGGGCTAAGCAATCACCTACGAACGGTTCACGGGCTGCCGATTGCTCTACCATTGAGCGAGCCGAAGAAGCAGCCTCCCCATCcacaccatcagcagcagcaaccaTCGGCGGCGGCGCTACTAGGGACGGATGTTAGCATGTCACATCTGTCTTCCCATCCCGTAGCACCACAACCGGCGGTGCTGAGTGCCAGCTTTCAGTCGTACCAGCAGCAACTGAGCGAGGCACAGCAGCTGCagcaccatcaacagcagcagcaccagcaaATGGCGGAGAAGCAGAAAGTTTACACGGTTTCCGATTTGCTCAGTATGAGCGAAGAGCTGCAGCATCATCACAACCAGCAGCAAAAGCAGCGTagtcaacagcagcagcaacagcaacagcacaACGGATCGACCGAAGCCGTCGAACAGCACATAGAAGACCGGGTAAACAACCTAAGCCGCATAAAGTCGGAGCTGCAAACCAACCTGCAAATCCAGAGCCTGTTCGGTCTGGCCAACCCGATGGGTATCAATCCACCGTTCGTGCCACCAACGGCCGCCATCGCCACCACAAAGTTGGTGTGCAGCTATTGCTACAACGTCTACAAGACGCCGCAAACGCTGTCGAGGCACATCGAAAAGTTTCATAGCTAA
- Protein Sequence
- MMPNFYDHSRPTMVPTSSAMLGPPTNSGENNSKKQHIIPFDLEATLQAVDNEVLEGEEGSCPICNKTFSRKSSLLNHIRNHTAEKKYICEYCQKGFSQQANLRNHVRIHTNERPYVCIDCGKAFTQITNLNNHRRLHTGERPYVCIEANCGRSFAQVTNLNNHMKTHHKTQQYVCNQCPRRFYQATQLNLHLISEHSTTKTFFCPQCPDKRFKSQSLFQHHLKIHGSNFGFPCSKCDERFIQESHLILHMTHQHGDYACSMCSMTFNDEVLLKKHVQRHLDGRYLTCPVLGCNEGFTMKNHLTKHMQMRHPAIDLKKGSSSTGAILDTAKRPPKHCCHYFNCNESFDTSDGLSNHLRTVHGLPIALPLSEPKKQPPHPHHQQQQPSAAALLGTDVSMSHLSSHPVAPQPAVLSASFQSYQQQLSEAQQLQHHQQQQHQQMAEKQKVYTVSDLLSMSEELQHHHNQQQKQRSQQQQQQQQHNGSTEAVEQHIEDRVNNLSRIKSELQTNLQIQSLFGLANPMGINPPFVPPTAAIATTKLVCSYCYNVYKTPQTLSRHIEKFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471714;
- 90% Identity
- -
- 80% Identity
- -