Wsmi001715.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:18410409-18413081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.023 16.9 3.1 1 23 168 190 168 190 0.98 2 10 0.00012 0.013 17.6 1.2 1 23 196 219 196 219 0.97 3 10 0.00012 0.013 17.6 1.1 2 23 226 247 226 247 0.97 4 10 3.1e-06 0.00034 22.6 1.0 1 23 250 272 250 272 0.98 5 10 8.2e-06 0.00089 21.3 0.2 1 23 278 300 278 300 0.98 6 10 4.2e-06 0.00046 22.2 0.8 1 23 305 327 305 327 0.99 7 10 6.2e-06 0.00068 21.6 1.6 1 23 337 359 337 359 0.99 8 10 0.00012 0.013 17.6 3.6 1 23 365 388 365 388 0.97 9 10 1.4e-06 0.00015 23.7 0.7 1 23 394 416 394 416 0.97 10 10 6.6e-06 0.00072 21.6 1.5 1 23 422 444 422 444 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAGAGTGACGAAATGGACAAACATTTGTCCGGAATGGAAGATTTGTTGGATAAGTTGACCGCCGCGGGTCAGAACTGCGCTAAAAATCGCGTTTGTGTGAGCATAACGACCGGTGCCAGCACACATCGCGCTTTGGATGTCCTACGCCAGATGAAAACTGAAGATCTGATGACTTCAGCCACAGATTATTGCGAGCCGCTGCAAGTGAAGGAGTGGAAAGACGCCATAGATACCGAGACCAAGCACAAAGCCCAGCGTTACGGTGTAGATTACTTAGATGTTTTTGCACCAGCGACACGCTCTGAGACCCTGCGAGTGTACCTGGCAGTAGCGGGAAAGAACCAGATGAGTCTACAGCACATCGATGTCCGGACGGCTCGTTTACacgtagcgaacctatacattagagaaatgacaagacactcacctgatgCCGCCACTCCAGAGGCAACTGTTTCTGCAGTTGATGATAAGCAGGGTGCCGGCTATAAAAGTCACAAATGTAACATCTGTGGTAGGCACTATCAAAGCGAAAAGGCTCTTAAAGTCCACATCAAACTACACAAATGGCATAAACCGTACGAGTGTGACAAGTGCAGTAAGTACTACAACAACCCAGGTTCGTTACGAGTACACAAGAAAAGGATGCACGGAAGCGAACCCATGGAACGATGCAAAATTTGCGGAAGGGCGTTCCGGCATGATCATGAGCTGGCAGCACACGTCGCCAGTCATGTCAAACATGTTTGCGATATATGTGACAAAGAGTATTTCAAGAAAAGTCTCCTAATGGCTCACATGAGAGTTCACACCGGTGAGCGACCTTTCGTGTGTGAAACATGTGGCAAATCATTCGGCAAAGAATCCGTTTTAGTAACTCACATGATGACTCATGCAGATAAGCAATTTAAATGTGACATATGCGGGAAACCATTCACCAGCAAATATTATGCTGCGGAGCATAGAAAAACACATACGCAGAAGCGCAGCACTGATCCAAAATTCAAATGTGAAATGTGTAACAAAGCATTCCCGTACAACAATTATCTTATTCAGCATAGAAAAACACACCGCACTGATCGTCCGCACAGCTGCCAAATTTGCAGTAAATCTTTCAAAACGTCAAATGTTTTATACACTCACATGAAAAAAGTGCACAGCTCTCAGCACCCTCATATGTGCTCGATTTGTGGAAAAGAGTTCGCATTCCCCTCCCTTCTCAAGCAGCACATGGCTCGTCACATGGAAGAACGACCTTACAAATGTAAAACCTGCGATGCATCATTCAAGTCATCTAGTACTTTATGGGAGCACAGGAAAGAGCACACGAGCGCTTAG
- Protein Sequence
- MSESDEMDKHLSGMEDLLDKLTAAGQNCAKNRVCVSITTGASTHRALDVLRQMKTEDLMTSATDYCEPLQVKEWKDAIDTETKHKAQRYGVDYLDVFAPATRSETLRVYLAVAGKNQMSLQHIDVRTARLHVANLYIREMTRHSPDAATPEATVSAVDDKQGAGYKSHKCNICGRHYQSEKALKVHIKLHKWHKPYECDKCSKYYNNPGSLRVHKKRMHGSEPMERCKICGRAFRHDHELAAHVASHVKHVCDICDKEYFKKSLLMAHMRVHTGERPFVCETCGKSFGKESVLVTHMMTHADKQFKCDICGKPFTSKYYAAEHRKTHTQKRSTDPKFKCEMCNKAFPYNNYLIQHRKTHRTDRPHSCQICSKSFKTSNVLYTHMKKVHSSQHPHMCSICGKEFAFPSLLKQHMARHMEERPYKCKTCDASFKSSSTLWEHRKEHTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -