Wsmi001779.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:18783188-18785457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0017 0.19 14.0 3.2 1 23 82 104 82 104 0.98 2 14 6e-05 0.0065 18.6 2.4 1 23 110 132 110 132 0.97 3 14 0.0024 0.27 13.5 0.5 1 23 138 160 138 160 0.97 4 14 3.3e-06 0.00036 22.5 0.3 2 23 167 188 166 188 0.97 5 14 3e-05 0.0032 19.5 5.1 1 23 194 217 194 217 0.98 6 14 0.022 2.3 10.5 0.5 1 23 230 251 230 251 0.97 7 14 2.6e-05 0.0029 19.7 2.6 1 23 269 291 269 291 0.99 8 14 0.026 2.8 10.3 0.9 1 20 297 316 297 319 0.94 9 14 1.6e-07 1.7e-05 26.6 3.1 1 23 325 348 325 348 0.98 10 14 0.0076 0.83 11.9 4.2 1 23 367 389 367 389 0.98 11 14 0.00037 0.04 16.1 2.5 1 23 395 417 395 417 0.98 12 14 6.1e-05 0.0067 18.5 2.4 1 23 423 445 423 445 0.98 13 14 6.3e-05 0.0068 18.5 2.1 1 23 451 474 451 474 0.98 14 14 7.1e-05 0.0077 18.3 2.3 1 23 502 524 502 524 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAATCACTCAAATAAAGGTAGAAGAGCTTATAATATTCGACCTTTCGCCACCGGAAGAGAATACTCCACTCGCTAGCAGCACCGGTGAAACGACTTCAACGAACACCCAGAGGGAAGGTGTAGTTGATTTGATACATAGACATGTGACGGATATCAATGATGAAGTTCGGTGTACAGCAGCTTGTGAGGACATTACAGCTTCTCGCTCCAGCAACTCGAACGGTTTGGGTAACAAGTACGTTTGTGAACTCTGCAACAAGGAATGTAGTGGAAAGCAGAACTTCGAAAACCATAAAAAAAGTCATACATGGAAACGTCAATTCGCTTGTGATATCTGCAACAAGAAATATAGCACAAAATTCAACATGAAGATACATAGAACAACTCACACCGGGGAACGACCTTTTGCGTGTGATATCTGCAGTGGAACGTTCAGTACAGCTAGACGTTTGCAGTACCATAGACGTGCTCACACGAGAGATCGCCATTTACAGTGTGACATATGCGGTAAAAACTTCCCAACCAAAGTTCGTCTCGTAGATCATATGCGCAGGCACAGCGATGAGCGACCGTTCAAATGCGACATCTGTGACTCGTCATGCAAAAGATCTCAAAATTTAAGCAAACATATGCGGAAATTCCACAATGTCGATCCCGTCGGTGATCATCCACAGAAAAAGTACGTTTGTGAAGTTTGCAACAAGGAATATAGCGCAAAAGGATTCGGGAATCATAGGAAAACTCATTCCGGGAAACTTCTGCTGCACCATGAAAACACCCATACAAAGGACCAGAAGTTTAAGTGTGACATATGCAAACGACGGTTTTCACTGAAATCACGACTTTCATCACATATGAAAATACACCGCTCAGACTGCCCTCATAAGTGCTTAATTTGTGATGAAAGATTCACAGATGCCGTTATTCTCGAAAACCATATGGTCTGTCACAGTGATGAACGACCCTTCAAATGCGACATCTGCGGTAAATCATACAAAAGAACTAAATCTTTACAGCGCCATATTCGCAAATTCCACGAGTCCTACTCTAGGATTGTGGAAGAACCGAAGGACTCCGCCGGAAGGCAACATTTTGAGTGCGACATCTGCAGCGAGACATTCCACTCAAGTACACGGTTGCATTATCATATGAAGGCTCATACAGGAGTCCCGAATTTTGAGTGTGACATATGCGAACGACGCTTCGTTCTGAAATCTCATCTACGGTTCCACATGAAAATACACCTCACCGATTGTCCACATACGTGCCAGATTTGCGATAAAAAATTCACAACCAATCTTCGTCTCGAAGATCATATGCTAAGCCACACCGATGAGCGACCTTTCAAATGCGACATCTGTGGCACAGCATTCAAGATAACTAGACATGTAACGCGCCATATGAAGAGGGTCCACAAGGTCAATCTCTCCTCAAGCAACGCGAAAAGTTTGAAGCCAAACCAGGCTGGTAACAGTCTAAGCAATGATTCAACAGTATACAGCTGCAACATATGCGGCAAACAGTACAAACAAAAATGTTCACTTCGCATACACGTGGATCTTCATCAGGTTACTGTTATGAGATGTTAG
- Protein Sequence
- MEEITQIKVEELIIFDLSPPEENTPLASSTGETTSTNTQREGVVDLIHRHVTDINDEVRCTAACEDITASRSSNSNGLGNKYVCELCNKECSGKQNFENHKKSHTWKRQFACDICNKKYSTKFNMKIHRTTHTGERPFACDICSGTFSTARRLQYHRRAHTRDRHLQCDICGKNFPTKVRLVDHMRRHSDERPFKCDICDSSCKRSQNLSKHMRKFHNVDPVGDHPQKKYVCEVCNKEYSAKGFGNHRKTHSGKLLLHHENTHTKDQKFKCDICKRRFSLKSRLSSHMKIHRSDCPHKCLICDERFTDAVILENHMVCHSDERPFKCDICGKSYKRTKSLQRHIRKFHESYSRIVEEPKDSAGRQHFECDICSETFHSSTRLHYHMKAHTGVPNFECDICERRFVLKSHLRFHMKIHLTDCPHTCQICDKKFTTNLRLEDHMLSHTDERPFKCDICGTAFKITRHVTRHMKRVHKVNLSSSNAKSLKPNQAGNSLSNDSTVYSCNICGKQYKQKCSLRIHVDLHQVTVMRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -