Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:18249276-18254212[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.7e-05 0.0029 19.7 4.0 1 23 315 337 315 337 0.98

2 11 0.00031 0.034 16.3 1.5 3 23 346 366 345 366 0.98

3 11 9.3e-05 0.01 17.9 2.6 1 23 372 394 372 394 0.98

4 11 2e-06 0.00022 23.2 0.6 1 23 400 422 400 422 0.99

5 11 0.00013 0.014 17.5 0.8 1 23 428 450 428 450 0.97

6 11 3.2e-06 0.00035 22.5 0.3 1 23 456 478 456 478 0.98

7 11 0.00021 0.023 16.8 0.1 1 23 486 508 486 508 0.97

8 11 0.00025 0.028 16.6 1.0 1 23 514 537 514 537 0.97

9 11 0.00047 0.051 15.7 0.3 1 23 542 564 542 564 0.98

10 11 1.3e-07 1.4e-05 27.0 3.1 1 23 570 592 570 592 0.97

11 11 4.2e-05 0.0046 19.0 1.3 1 23 601 623 601 623 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.7e-05	0.0029	19.7	4.0	1	23	315	337	315	337	0.98
2	11	0.00031	0.034	16.3	1.5	3	23	346	366	345	366	0.98
3	11	9.3e-05	0.01	17.9	2.6	1	23	372	394	372	394	0.98
4	11	2e-06	0.00022	23.2	0.6	1	23	400	422	400	422	0.99
5	11	0.00013	0.014	17.5	0.8	1	23	428	450	428	450	0.97
6	11	3.2e-06	0.00035	22.5	0.3	1	23	456	478	456	478	0.98
7	11	0.00021	0.023	16.8	0.1	1	23	486	508	486	508	0.97
8	11	0.00025	0.028	16.6	1.0	1	23	514	537	514	537	0.97
9	11	0.00047	0.051	15.7	0.3	1	23	542	564	542	564	0.98
10	11	1.3e-07	1.4e-05	27.0	3.1	1	23	570	592	570	592	0.97
11	11	4.2e-05	0.0046	19.0	1.3	1	23	601	623	601	623	0.95

Sequence Information

Coding Sequence: ATGGAAGAGCAGCCTGATTTCGCCCGTAAACTACTCAAGACAGTGGCGGACTGGGAGAGATTGTGGAAAGACCTAGCAGATGCCATCAACCGGAAAGGTCCCCCAGTGCGGAGCGTGACAGAGTGGAAGAAGGTTTGGGTGGATTATAAATatagagtgaaaatgaaactgcttcataacaaaaaatgccCGGACAAACAAAAGAGTTTAAACAGGTTCGAGCAGAGTGTAGCCAATTTTACTGGTTTGAAGGATGCTCTACTCGGCACAGCAGCCACCAAATCGTTCGATTGTCGAATTTCCTTTCAGTCTCCCCAACTGCAACGGAACAGGTCCAACATTAACGCATCACAGATCAAGTTTTTGGTCAATTTCATGGAACGACATCCCAATCTCGCCCGTAGCCGATTTAAAACCCCGGAGGAGAAACGAAACTCTAAACGGCTGTGGAATGACCTGCAGGAAGCTCTAAACCAGCGAGGACCCCCGAAGCGGCACATGTTGGAGTGGAAGAAGGTGTGGCAGGATTACAAATATAACGTGAAACTTAAGCTACGGCACAACTTGAACTGCCTAGCAAAACCTGGaggaaacaggaaaaaaattaagTATTTAAATCAGTACGAGGAAAGTGTCGTGCGATCCGCCGGACTGAATGAGATTGTTGGAGCTACGACTGTAGCTACCAAATCGGCCGATAAAGTTACGATTCAACCGGACGTCAATACGCTTGAGTTGAACTCACAGTCGAATGACTCGGCAGAGAAGACTGAAACGATGCTAGTGGAGGTGGAGGTTGAAGAAGCCGAAAACGACAATACGGACCACAAGACAGCCGATGCTACTAAAAGCTCTACAAAAGCCAACAGTAAAACAGAACCATTCCAAAACCAGCCAGCTTCCGCCAATCGAAGTGAGTTGAACCAAGACGAGCGGAGGAAGCACCAGTGTGATATCTGCGGGAAGTCCTACACTAACAAGCATTACCTGGCTTACCATGTTACAACTCACACTGGACAAAAGCAAAAGAACATTTGCGATATCTGCGAGAAAGGGTTCGGCACGAAATGTATGCTCGCAAACCACAGAAGGACACACACGGGCGAACGGCCATTCCAGTGTGATATCTGTAGCAAAACCTTCGGACGAGTCAGTTGTCTAAACTTACATAAGAGAATCCATACAGAGGGGAATGTTTTCAAATGTGACGTATGTGGCAAAGAGTTCCAACTGAATGCACAACTGGTGCGGCACCAGAGGACGCACAGCATGGAGCGCCCTCACAGCTGCCTAATTTGCGGTAAAGGTTTCAGAATAGGCTATCTGTTGATAAATCACATGCGTCGTCATACCGGCGAGCGACCGTTCAGATGTGATATCTGCGGTTCGTCGTTCACATCTGCTACCAACTTGATCGTGCACAGGAAAATTCACACGAACGCCGAAGAACGACCGTTCCATTGTGACATTTGTGGTGCAAAGTTCGCCGTCAAAGGCAACCTCGTGGCTCACGGAAAGGTACACTCGAAGGAGCGGTTCTTCAAATGTTTCCGCTGCGGGATAATGTTCGACTCGAACGAAGAACTGAGGGAGCACAAGCGACAGCTGCACGGCGATCGACCGTTTAAGTGTACGCAGTGCGAGAAGGCTTTTCTCTCGGCCGGTAACCTGCGGGAACATCTAACGGTGCACACGGGTGAGAAACCACATCGGTGTTCGGTTTGCGGACAGAGCTTCAGTAGGTCCAGTAATCTGACGAGGCACCTCAAATTGCACATGGGTGAACTCGCATCGGATCACTACCAGTGTGATCAGTGCGATTGTCGGTTCCCGCGAAAGGAAGATCTGGTGAGGCATCAGGTTGGACATGAGGaaaattaa
Protein Sequence: MEEQPDFARKLLKTVADWERLWKDLADAINRKGPPVRSVTEWKKVWVDYKYRVKMKLLHNKKCPDKQKSLNRFEQSVANFTGLKDALLGTAATKSFDCRISFQSPQLQRNRSNINASQIKFLVNFMERHPNLARSRFKTPEEKRNSKRLWNDLQEALNQRGPPKRHMLEWKKVWQDYKYNVKLKLRHNLNCLAKPGGNRKKIKYLNQYEESVVRSAGLNEIVGATTVATKSADKVTIQPDVNTLELNSQSNDSAEKTETMLVEVEVEEAENDNTDHKTADATKSSTKANSKTEPFQNQPASANRSELNQDERRKHQCDICGKSYTNKHYLAYHVTTHTGQKQKNICDICEKGFGTKCMLANHRRTHTGERPFQCDICSKTFGRVSCLNLHKRIHTEGNVFKCDVCGKEFQLNAQLVRHQRTHSMERPHSCLICGKGFRIGYLLINHMRRHTGERPFRCDICGSSFTSATNLIVHRKIHTNAEERPFHCDICGAKFAVKGNLVAHGKVHSKERFFKCFRCGIMFDSNEELREHKRQLHGDRPFKCTQCEKAFLSAGNLREHLTVHTGEKPHRCSVCGQSFSRSSNLTRHLKLHMGELASDHYQCDQCDCRFPRKEDLVRHQVGHEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -