Wsmi054203.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:253308678-253311561[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00093 0.1 14.8 0.7 1 23 228 250 228 250 0.97 2 14 1.4e-05 0.0015 20.5 2.0 2 23 257 278 257 278 0.97 3 14 2 2.2e+02 4.3 0.2 2 12 283 293 282 296 0.89 4 14 0.00051 0.056 15.6 0.3 3 23 344 364 343 364 0.97 5 14 0.078 8.5 8.7 0.6 1 23 442 465 442 465 0.93 6 14 0.11 12 8.3 0.1 3 21 473 491 471 492 0.93 7 14 0.43 47 6.4 2.7 1 23 501 524 501 524 0.95 8 14 0.00017 0.019 17.1 2.6 1 23 548 570 548 570 0.97 9 14 1e-06 0.00011 24.1 5.2 1 23 577 599 577 599 0.98 10 14 4.6e-07 5.1e-05 25.2 1.2 3 23 613 633 611 633 0.96 11 14 9.8e-06 0.0011 21.0 2.5 1 23 639 661 639 661 0.99 12 14 1.8e-06 0.0002 23.3 2.2 3 23 669 689 667 689 0.97 13 14 5.4e-07 5.9e-05 25.0 1.1 1 23 695 717 695 717 0.98 14 14 0.00078 0.085 15.0 0.1 1 23 723 747 723 747 0.93
Sequence Information
- Coding Sequence
- ATGGAGGTCATGGATATGAGCACCGAGTACGATCTGAGCAAAATTTGCCGATCCTGTCGGAAGGATTATCCCCAGTTACAGTCTATATTCCATTCGTTTGGCAATGGCGGGGAGATTACGCTGCACGAAATGCTTACAAGTTGTACGCAGATTCAGATTCACTACAACGACGGTATGCCGCACAATCTGTGTGCCGTCTGCGTGGCGGAGGTCAACGCTGCGTATAAGTTTCGCAAACGCTACGAACAGAGTGATATAATGCTCCGCGAGTACATTTCCAGGCGGAAGCTGGAAGCCAGTAACGAGACGGACGACAGCAGCAGCTTGATTAAGGTGGAATTATTTGATATCAAACCGGAAATTACCTTCATAGATGCGGATCCGTTGATCGGCGAAAAAGGCTGTGTCGCTACGATAAAAAAGCTTGTAGAGACTAAAAGATCGGACATAGAAGATCAGAAAAACATTGACGATTTGATAGAGGAGATAAACGATGAGGATGATTACGGTGATTCGGACGCTATAGTGGCGGAAATCGTAGACAATGAAGACGATGGGGACAGCGACTACGAGGAGAACAGTTTGGATGATTTGATCGAGGAACTTGGCGATCCGGTTTCGGGAAAAAGGCAAACCCGGTCCACTCAGGGCAAGGGCTACTCGAGGATTAAGGGAGGAAAATTTTCGTGCGATTCCTGTGATCGTGTCTTTACCGATAAACGTGGTATCACGAATCACGTGAAACAGCATGTACCGAAAGAGTTGAGACAATGTTCGATTTGTAACCGGGGATTTTCCACCAGCTATCATCTGGGACGGCATATGAAGGGTCATGAGAATGATACGCAGTGTGAACATTGCGAGAGAAAATTTGCTTCGGTTGCGTATCATGAATATAAGGAACATTTGGCGTTGGAACACCCGGGCAAAGAAGTTCTGCCGTCGAAaaaaagcgAAAAACCAGAGCGTGATCGCGGTTTAAAGCTATCCGTAGAATTGTTGGAGGAGAAGGAAAAAATGGAAGCAATTTGTCGAATCTGCGATACCACCTTTGATCGGATAGTGGAGttacgaaatcatttgaagatTCACGGTGATCCGAAATCGTTCGTCGATGTGAACATTCAAACCAAACCCTATTTGTTTGAGGAAGGTTATGTTCTGGAAAACTACATCGACTATTTAGTGCAGCAGGTCTGCAAGTGGGACGTTCTTCGCTTCTATCAGATCGTTCAGCCAGATGGTGAGGAACTAGAGCTAAGTGATTCCGATTCCGAACCAGAGGAGGGCACAGAAGCACCAGTTGGAATCGTTCGAAGAACGCATACGTGTGCTTTATGCAATCAAAGCTTCACTAGAATACGTGCTATACTGGAGCATGTCAGGGATCAGCATTCGTCCGAGGAATTGCTGGCCTGCCGACACTGCGCTCGTGGTTTTCCGAACACTGCACTGCTGGTGCGCCATTTAAAACAGCAGTGTGAAAATCACAGCAAAAAGTTTTTCTGTACTTTCTGCAACGAAAAATTCATGTGGCAAACCAGTCTGAACAAACACGCCCAGCGGAAACATAAGCCCACGAAGCCGTTACGTGAAGTTGCTGATGATCCGAACGACCTGGAGAGCAGTAAAGACAAGCAGCACGTTTGTCAGGTGTGCAACAAGGGCTTCCAGCGGCTGGAACACCTGGATCGTCACATAAAGATCCACATTCCGTCGGAGAAAAAGTTCGAATGTACCCAGTGCCATAAGAAGTTCAACCGAAAGGACAATCTGCGATCCCATatgaaaattcacaaaaaagatCCGCAGCTGGACAACAAGCAGAACCATCTGTGCGTGTACTGCGGCCGGGGTTTCTCCAATTCGTCGAATCTGATTGTGCACATGCGGAGGCACACCGGCGAGCGGCCGTACAAGTGCGATATTTGTGATAAGGGCTTCCCGCGATCATCTGATCTTCAGTGTCATCGCAGGACACACACTGGGGAAAAACCTTGTCTTTGTACTATCTGCGGAAAAGGCTTCTCTCGTTCCAATAAACTTGTGCGCCACATGAGAATTCACACCGGAGCAAGACCCTATATGTGTACGTACTGTGACCGAGCATTTACTCAATCGAATGATCTTACGCTACACATCCGCCGGCACACGGGGGAAAAGCCGTACGTTTGCGGCGTCTGTAACGAACGTTTCATTCAGGGTACCGCCCTGAAGGCCCACCAACGGGTAACTGGTCACTTCGACGACGGCAGTAACCAACCGGAGCGATTCGCCAGTATCAGCGTGAATAACCCCAATCGGCTCGGAGTCAACGGGCCGAATGCGGTACGACAGAGTTCTTCTTCGGCGACAGACGGTGCACCACCGAAACCAGTTAAAGCGGTTAAGTCGAGAAAAAAAGCCACCAGCCATCCTCGCTCTGCCCAAACCCAAGCCGCTGAGACTCCATCCTTACCCGTACCGACCACAGCATCGACTGCTGGTTCCGCTCCTACTTCACCACTAGGTGATGGTAGCAGACCACATCTACAGAATCTCTCCGCTAGTACCGCACCACCCCATGGATATGTGCCGGTACCCTACCTTATGCAGAGCTATGACCTCGGATCGACCGGGTTGTTTTCGCAAACTTTCAATCAGCCGTAG
- Protein Sequence
- MEVMDMSTEYDLSKICRSCRKDYPQLQSIFHSFGNGGEITLHEMLTSCTQIQIHYNDGMPHNLCAVCVAEVNAAYKFRKRYEQSDIMLREYISRRKLEASNETDDSSSLIKVELFDIKPEITFIDADPLIGEKGCVATIKKLVETKRSDIEDQKNIDDLIEEINDEDDYGDSDAIVAEIVDNEDDGDSDYEENSLDDLIEELGDPVSGKRQTRSTQGKGYSRIKGGKFSCDSCDRVFTDKRGITNHVKQHVPKELRQCSICNRGFSTSYHLGRHMKGHENDTQCEHCERKFASVAYHEYKEHLALEHPGKEVLPSKKSEKPERDRGLKLSVELLEEKEKMEAICRICDTTFDRIVELRNHLKIHGDPKSFVDVNIQTKPYLFEEGYVLENYIDYLVQQVCKWDVLRFYQIVQPDGEELELSDSDSEPEEGTEAPVGIVRRTHTCALCNQSFTRIRAILEHVRDQHSSEELLACRHCARGFPNTALLVRHLKQQCENHSKKFFCTFCNEKFMWQTSLNKHAQRKHKPTKPLREVADDPNDLESSKDKQHVCQVCNKGFQRLEHLDRHIKIHIPSEKKFECTQCHKKFNRKDNLRSHMKIHKKDPQLDNKQNHLCVYCGRGFSNSSNLIVHMRRHTGERPYKCDICDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGARPYMCTYCDRAFTQSNDLTLHIRRHTGEKPYVCGVCNERFIQGTALKAHQRVTGHFDDGSNQPERFASISVNNPNRLGVNGPNAVRQSSSSATDGAPPKPVKAVKSRKKATSHPRSAQTQAAETPSLPVPTTASTAGSAPTSPLGDGSRPHLQNLSASTAPPHGYVPVPYLMQSYDLGSTGLFSQTFNQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -