Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:253299057-253301604[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-05 0.0011 21.0 4.9 3 23 209 229 207 229 0.97

2 14 5.8e-07 6.4e-05 24.9 2.9 3 23 239 259 237 259 0.96

3 14 0.71 77 5.7 3.1 1 14 263 276 263 288 0.74

4 14 0.00087 0.095 14.9 0.2 3 23 325 345 324 345 0.97

5 14 0.26 29 7.1 0.4 1 21 423 443 423 446 0.86

6 14 0.00068 0.074 15.2 0.3 3 21 454 472 452 473 0.94

7 14 1.7 1.8e+02 4.6 0.7 3 23 484 505 482 505 0.90

8 14 0.0076 0.83 11.9 5.1 1 23 524 546 524 546 0.96

9 14 1.2e-07 1.3e-05 27.0 4.3 1 23 553 575 553 575 0.99

10 14 1.7e-07 1.9e-05 26.5 1.0 1 23 588 610 588 610 0.96

11 14 1e-05 0.0011 20.9 1.5 1 23 616 638 616 638 0.99

12 14 7e-06 0.00076 21.5 2.8 2 23 645 666 644 666 0.96

13 14 3.3e-07 3.6e-05 25.7 0.9 1 23 672 694 672 694 0.99

14 14 0.016 1.7 10.9 0.1 1 21 700 720 700 724 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-05	0.0011	21.0	4.9	3	23	209	229	207	229	0.97
2	14	5.8e-07	6.4e-05	24.9	2.9	3	23	239	259	237	259	0.96
3	14	0.71	77	5.7	3.1	1	14	263	276	263	288	0.74
4	14	0.00087	0.095	14.9	0.2	3	23	325	345	324	345	0.97
5	14	0.26	29	7.1	0.4	1	21	423	443	423	446	0.86
6	14	0.00068	0.074	15.2	0.3	3	21	454	472	452	473	0.94
7	14	1.7	1.8e+02	4.6	0.7	3	23	484	505	482	505	0.90
8	14	0.0076	0.83	11.9	5.1	1	23	524	546	524	546	0.96
9	14	1.2e-07	1.3e-05	27.0	4.3	1	23	553	575	553	575	0.99
10	14	1.7e-07	1.9e-05	26.5	1.0	1	23	588	610	588	610	0.96
11	14	1e-05	0.0011	20.9	1.5	1	23	616	638	616	638	0.99
12	14	7e-06	0.00076	21.5	2.8	2	23	645	666	644	666	0.96
13	14	3.3e-07	3.6e-05	25.7	0.9	1	23	672	694	672	694	0.99
14	14	0.016	1.7	10.9	0.1	1	21	700	720	700	724	0.91

Sequence Information

Coding Sequence: ATGGAAGCCGCCGATATGAATGAGGAGTACGATTTTGCCACTATCTGCCGTTGTTGTCGTAGGAGTGGCCTTATGCTACAACCAATGTTTCACTCTGCCGGAGACCACGGTATTGCTCTTCATGAAATGTTTACCCACTGTACTGCCATTCCGGTTCAGTACAACGACGGGTTGCCACAGAATGTATGCGGTGAATGCGTTCGTGATGTCAACAATGCATACAACTTCCGCAAACGTTATGAAGATAGCGACCGCTTCCTGCGGGAGTACGTTTCACGTCgtaaatttagcaatgatttggTCAAGGTGGAAGCGATCGACATAAAATCGGAGCTAGCGTTCTTCGATATGGGTAATGGGCCGCAAATTTTGCAACCGGAAACAGATAGTTTACATGGGGACGATGATGGTAGTGGAAATAATCAATACGATGAGGATGGTGAGTTTGCTGAGGCGGCTTTCGTATCCGCTGAATTGGGTGATATTTCTTCGGATGAGGAGCAGGATGGTTACTCCGATAGCAAAATGCACGTAAAATTAGATAGAAGTCGCCCGCGAGTAAAACAGCTGATTGCGGAGGAAATCGATCCGGATAAACTGCTGGCTGCCAAGAAAGCGAAGATGTGCTTTATTTGTAGCCGAACATTCACTCGAAATGATCACCTGAATCGacatttgaaaacgcatctggGAGGTCCATCGGAGCAGATTAATTGCACCATCTGCAGCCGAGCGTTTACCAGAAAGGACCACTTGAAGCGCCATATGAAAATTCACAGCAAAGATTTCAGCTGTGAGTTTTGTGACAGGAAATTTTCAACACTGGATTATAGTGAATATAAAACGCACATGGCTGAGGAACATCCCGGTAAAGAGTTGTTGCACGTTAGGAAACCAAGAAAACGGAAGGAGGGTACAAACGCTATCGATACGAGAGAGTACGTAATGGAAAAAGGTAAAACTGAGGCCATATGTCGCATTTGCGATACAAACTTTGATAGAATTGCTGAGTTGCGAAATCATCTTAAAATCCACATCGATCCGATAACGTTCGCGAGTGTCGACATCCAAACGAAACCGTATCTCTTCGACGAGGGTCGGGTCGTGGATAACTTTTTGGAAAACATCATACATCGCGTGTACAATTGGGATGTTACTCGGTTTTATCAGATTATGGAACCGGACGGAGAGGAGCTGGGTTTGAGTGATTCGGACTCGGAGCCGGAAGAAGGGGAACCTGCGGTAGAAGGTATCGTTCGAAGACAGCATACATGTACGGTGTGCCAACAATCATTTGGTCGAATAAAAATGATAATGGAGCACATTGTCGATCAGCACCAACCTGGAGAGCTGGTGAATTGCTCGCACTGTCAGCGTGGTTTTCCGAATAATGATCTTTTGGCGCGTCATCTGAAGTATCAATGTGAGAATCAGGACAAAAAGATCTTCTGCCCGTTCTGCAACGAACGATTTATGTGGCAAACAAGCATGAACAAACACGCTCAACAGCGGCACAAACCGACGAAGCCTCTATTGCAACGTTCCGACGACGAGGGGAAGGAAAAAACTCACGTTTGTCAGATTTGCAACAAGAGTTTCTTACATCGTCAGCATTTAGATCGCCATATGGGCATACACATTCCTGAGGAGAAGAAATTCAAGTGCACAGAATGTCACAAAGCGTTCAATCGGAAGGATAATCTTCGGACGCACATGAAGATCCACTTTCGCGATCCAGCGGATACCGTTCCGAAACTGGACTTTCTGTGCACGTTATGCGGACGGGCATTCTCTAAATCTTCGAATCTAACGGTGCACATGAGAAGACACACTGGGGAACGACCCTACAAGTGTGATTTTTGCGATAAGGGTTTCCCACGGTCGTTGGATTTGCAGTACCATCGCAGAACCCACACCGGTGAAAAACCCTGCATTTGCAAGATTTGTGGAGTTGGTTTCACACGATCTCACAAATTGATCGTGCATATGCGAACGCATACAGGAGACAGACCCTACAAGTGCACCTATTGTGATCGCGCATTTGCACAGTCCAACGATCTTACGCTGCATATTCGTCGTCACACCGGGGAAAAGCCGTACGCGTGTGGCGTTTGTGACGAGCGCTTCATTCAGGGGACAGCTCTGCGTAGTCATCAGCACGCTGCCGGACATTACGAAGGAGCCGATGGCAGCCAACCACCGTTTACCGGGACAACGCGCCGAGGAACAAAGTCGACAAAAAGATCGTCCTAA
Protein Sequence: MEAADMNEEYDFATICRCCRRSGLMLQPMFHSAGDHGIALHEMFTHCTAIPVQYNDGLPQNVCGECVRDVNNAYNFRKRYEDSDRFLREYVSRRKFSNDLVKVEAIDIKSELAFFDMGNGPQILQPETDSLHGDDDGSGNNQYDEDGEFAEAAFVSAELGDISSDEEQDGYSDSKMHVKLDRSRPRVKQLIAEEIDPDKLLAAKKAKMCFICSRTFTRNDHLNRHLKTHLGGPSEQINCTICSRAFTRKDHLKRHMKIHSKDFSCEFCDRKFSTLDYSEYKTHMAEEHPGKELLHVRKPRKRKEGTNAIDTREYVMEKGKTEAICRICDTNFDRIAELRNHLKIHIDPITFASVDIQTKPYLFDEGRVVDNFLENIIHRVYNWDVTRFYQIMEPDGEELGLSDSDSEPEEGEPAVEGIVRRQHTCTVCQQSFGRIKMIMEHIVDQHQPGELVNCSHCQRGFPNNDLLARHLKYQCENQDKKIFCPFCNERFMWQTSMNKHAQQRHKPTKPLLQRSDDEGKEKTHVCQICNKSFLHRQHLDRHMGIHIPEEKKFKCTECHKAFNRKDNLRTHMKIHFRDPADTVPKLDFLCTLCGRAFSKSSNLTVHMRRHTGERPYKCDFCDKGFPRSLDLQYHRRTHTGEKPCICKICGVGFTRSHKLIVHMRTHTGDRPYKCTYCDRAFAQSNDLTLHIRRHTGEKPYACGVCDERFIQGTALRSHQHAAGHYEGADGSQPPFTGTTRRGTKSTKRSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -