Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:26072142-26075099[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1e-05 0.0013 20.8 0.6 2 23 106 127 105 127 0.96

2 18 5.5e-06 0.0006 21.8 2.1 1 23 133 155 133 155 0.98

3 18 0.057 6.2 9.2 2.6 1 23 161 183 161 183 0.84

4 18 0.063 6.8 9.0 0.1 2 23 189 211 188 211 0.95

5 18 0.00036 0.04 16.1 5.1 1 23 217 239 217 239 0.98

6 18 4.3e-05 0.0046 19.0 0.2 3 23 244 264 243 264 0.97

7 18 0.0034 0.37 13.0 0.6 1 21 271 291 271 292 0.94

8 18 2.2 2.4e+02 4.2 9.2 1 23 297 320 297 320 0.98

9 18 0.0018 0.2 13.9 0.4 3 23 597 618 595 618 0.90

10 18 0.00084 0.092 14.9 0.1 1 23 628 650 628 650 0.94

11 18 4.1e-05 0.0044 19.1 3.2 1 23 656 679 656 679 0.98

12 18 0.0002 0.022 16.9 0.3 2 23 685 706 684 706 0.95

13 18 0.055 6 9.2 1.6 1 23 712 734 712 734 0.91

14 18 9.6e-05 0.01 17.9 1.5 1 23 739 761 739 761 0.98

15 18 9.9e-05 0.011 17.9 0.7 1 23 767 789 767 789 0.98

16 18 0.0028 0.31 13.3 0.4 2 23 796 818 795 818 0.96

17 18 0.00011 0.012 17.7 2.9 1 23 831 853 831 853 0.94

18 18 3.3 3.6e+02 3.6 5.0 1 23 859 883 859 883 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1e-05	0.0013	20.8	0.6	2	23	106	127	105	127	0.96
2	18	5.5e-06	0.0006	21.8	2.1	1	23	133	155	133	155	0.98
3	18	0.057	6.2	9.2	2.6	1	23	161	183	161	183	0.84
4	18	0.063	6.8	9.0	0.1	2	23	189	211	188	211	0.95
5	18	0.00036	0.04	16.1	5.1	1	23	217	239	217	239	0.98
6	18	4.3e-05	0.0046	19.0	0.2	3	23	244	264	243	264	0.97
7	18	0.0034	0.37	13.0	0.6	1	21	271	291	271	292	0.94
8	18	2.2	2.4e+02	4.2	9.2	1	23	297	320	297	320	0.98
9	18	0.0018	0.2	13.9	0.4	3	23	597	618	595	618	0.90
10	18	0.00084	0.092	14.9	0.1	1	23	628	650	628	650	0.94
11	18	4.1e-05	0.0044	19.1	3.2	1	23	656	679	656	679	0.98
12	18	0.0002	0.022	16.9	0.3	2	23	685	706	684	706	0.95
13	18	0.055	6	9.2	1.6	1	23	712	734	712	734	0.91
14	18	9.6e-05	0.01	17.9	1.5	1	23	739	761	739	761	0.98
15	18	9.9e-05	0.011	17.9	0.7	1	23	767	789	767	789	0.98
16	18	0.0028	0.31	13.3	0.4	2	23	796	818	795	818	0.96
17	18	0.00011	0.012	17.7	2.9	1	23	831	853	831	853	0.94
18	18	3.3	3.6e+02	3.6	5.0	1	23	859	883	859	883	0.94

Sequence Information

Coding Sequence: aTGTCGAAACGAAAATCGGCAGCAGCCTTTAATAGCGTCGAAGAAAATGGTGATAACAAAAGTGATTACGCGACACACGAAAAACTAGAAGTGCCCGAATGTACGGTGGAAGTGATAAATCGAAAGAGTAGCAGAGGGCGGCCACGTAAACCTAGACCGAACGAGCTGCTACTAGAAGAACCCCTGGAACCCGAATATGCAAATCAAGCAGATGACAATGGCAACCAAACGCAAACAGATTCCTCTTGTGCAAAACAAAACGAAGGAAAAAAGCAGAAGGCAGGTCGCCGAAAGAACACCACTAAATCGGAAATACGTTGCGAGATCTGTGgtaaaacttttaaatttcgagcCACTCTCAAGCAACACGAGCAGATTCACTACGGAATCAAGGAGTTCGAATGTACCGTTTGCGGGAAACGTTTCATGCACAAGGGTACACTGAAGGTTCATCTACGATTGCATACCGGTGAAATGCCGTACAAGTGTCCCTACTGTCCGAAACGTTATCGGGGTCAAACCGCTCTGGATTGTCACGTTTTTCGGCACACCAAACAGGGCACCAAATGTCCACAGTGTTCCTCCGTGTTCGCTACTCCGTCGATTGTGAAGCAACACATCCGTGAGGTTCATACGACGGAACGTTCGCATACTTGCCAAATCTGCGGTGTTACGTACAAACACCGGAAGAGTTTGCGGTTGCACTTGCGCAATCATCAGAAGAGAAATTGTCCCGATTGTGGCAAGGTTTTCTCCAGCGTTTATGCTATGATGACCCATCGAAAGATTCATGCTCAGGACCATTTTCAGTACAAGTGCACTTTTTGCGAGCGGAAGTTCGAGAAAGAGGACGAACTGCAATCACATGCGAAGCTTCGCGGAAGGGGTTTCCAGTGTGACATGTGCTGCCATAGTTTCAACAAAAAAGACTACCTGGACAATCATCACCGGAGGAACCACTGGAAGGAGCTTGGATTAGAGCAGCTGAAAGTGGCTGCGCCCAAAAATGGTTGGAATCGGAAAGGCGTTCCGAAACCGAAGAAATTTGTTTCTGTGCCACTTAACTCGGTGGAGGCCTTAGCGGAGCCATCAACCTACAATGTTGTTACTGAAAGCGAACGGTTAATCAGTACTTTAACAGTTTATCAACCTGACGTGGAAAGTGAAACCGCCCCAGCGAATTCGGAGTTAATACCAACAACGATAGTCACAAAGATCGAAGAACCGTTTGATAGATGTTATACGTTGGAAATTCAATCTAACGCTATTCTGCCCTCGGTTGGCGTCCAAAAGCAGGACCAACCGGCCGAAGTTGATTTCGATCACGATTACGCTGGTATAAACGATTTCGGTGCCGCTTCGTACAGTGACGATAACTGTTTAGAACTTGAAGAAGCACGCCTAGAAACGGGTAGCGTTAAGTCGGAACATGACTTTAAGGTGGAACTGGTTGATATTAGTGAACAGAGAAGTCCAGCGCAGAGCTGCGAAGCAGAAACTGTGCCTAAAAGTGAGATTTTGGACGAAGAGCAAGAACAATTCGGTAGTGATGATGAAGTGCCTCTGGCGACACTTGCATCAAAAAGCATTAGACTAAAGACTGAAAAGGGTAACACCGTGAATAACGACCAAGATCTCAATTCAGCGGAGAATAATGAAGATGACAATGAAAACATTCCACTATCGCAACGTAGAAGAAAATCCGACAAGCGTCAAAAGCGACGTTCAAGCAATATCACCAAAACAGGCGCCCAAGGTGGATCCAACCGCGTCAGACAAGAACTGTTCTGTCCCTACTGTGGGAAACGGTTCGATGGTCGAACTGTACTCAAGAAGCACAAGGCCGAAGTACATCCCGACAGGAAACCAAACAAAGGGCCTTTCAGTTGTGAAATCTGCGGCAAATCCTACGCCACGGTATCGTCAATGGTGGTGCACCGGGGAAATCATGCCCAGTACCAACGGTACAAGTGTGACGAATGTCCGAAAGCCTTCACCTATCGATGCTACCTGGAAAACCACAAACGATCGGAGCATCGGCACGAACGGCTGATCTGCCCCATCTGTGGCAAACTGTTCAAGTACAGTCAGGACCTGAAGGTGCACAACAAACAGCACGCCGAAGATAAACCATTTAAGTGTGACCAGTGCCCTTCGGTATTTCGGTATCCGAGCGCGCTGCGCTGCCACAAGGCACTGCACGTGAAAACGGTGTTCACGTGTGATATCTGCCAGAAAGTGTTTAAGTACGACAACAGTTTGCGGGTTCACAAGCGGTTGCACACAGGTGTTAAGCGGTTTCAGTGTGAAATTTGCAACCGCGAGTTCCACACGAAGGCTCCACTGGTTCGACATTTGGCAACGCATTCGGTCGAGCGGGAAATGAAATGCGTGGTGTGTGATAGAATTTTCTACAAAAAGATTGAACTGACCATTCATCAGACTAAAGAGCATCCAAATAATCCACTCATCGGGACGACGGTGAAAATTCACACCTGTCAGGTGTGCGGCCAGGAATTTACCAAGAAGAGTAATCTTAAATCGCACTCCTACATCCACGGGGATGTGTACAAATACAAGTGTGACCTGTGCGAGGATCAACAGTTTAAGCAACACGCAGGATTGAGGCACCATTTGATACATTTCCATAAGCTAGAGGTGCGGAAACGAAAGCAGAAAGAGCCTGTTGCGAAAAGTTCGACAGTGGATGGCACTCTGGCAGCGCCAGTTTGTGTCATGCACAACGGGGTTGAATTTCTGGTGCAACAAATTCAATGCGAATAG
Protein Sequence: MSKRKSAAAFNSVEENGDNKSDYATHEKLEVPECTVEVINRKSSRGRPRKPRPNELLLEEPLEPEYANQADDNGNQTQTDSSCAKQNEGKKQKAGRRKNTTKSEIRCEICGKTFKFRATLKQHEQIHYGIKEFECTVCGKRFMHKGTLKVHLRLHTGEMPYKCPYCPKRYRGQTALDCHVFRHTKQGTKCPQCSSVFATPSIVKQHIREVHTTERSHTCQICGVTYKHRKSLRLHLRNHQKRNCPDCGKVFSSVYAMMTHRKIHAQDHFQYKCTFCERKFEKEDELQSHAKLRGRGFQCDMCCHSFNKKDYLDNHHRRNHWKELGLEQLKVAAPKNGWNRKGVPKPKKFVSVPLNSVEALAEPSTYNVVTESERLISTLTVYQPDVESETAPANSELIPTTIVTKIEEPFDRCYTLEIQSNAILPSVGVQKQDQPAEVDFDHDYAGINDFGAASYSDDNCLELEEARLETGSVKSEHDFKVELVDISEQRSPAQSCEAETVPKSEILDEEQEQFGSDDEVPLATLASKSIRLKTEKGNTVNNDQDLNSAENNEDDNENIPLSQRRRKSDKRQKRRSSNITKTGAQGGSNRVRQELFCPYCGKRFDGRTVLKKHKAEVHPDRKPNKGPFSCEICGKSYATVSSMVVHRGNHAQYQRYKCDECPKAFTYRCYLENHKRSEHRHERLICPICGKLFKYSQDLKVHNKQHAEDKPFKCDQCPSVFRYPSALRCHKALHVKTVFTCDICQKVFKYDNSLRVHKRLHTGVKRFQCEICNREFHTKAPLVRHLATHSVEREMKCVVCDRIFYKKIELTIHQTKEHPNNPLIGTTVKIHTCQVCGQEFTKKSNLKSHSYIHGDVYKYKCDLCEDQQFKQHAGLRHHLIHFHKLEVRKRKQKEPVAKSSTVDGTLAAPVCVMHNGVEFLVQQIQCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -