Wsmi034227.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- Zfp646
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:250728795-250731541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 1.8e+02 4.6 0.1 1 23 185 207 185 207 0.85 2 15 0.0017 0.19 14.0 1.0 1 23 218 240 218 240 0.97 3 15 0.0049 0.53 12.5 0.1 1 20 245 264 245 266 0.95 4 15 0.0018 0.2 13.9 4.6 1 23 291 313 291 313 0.96 5 15 0.027 2.9 10.2 0.1 1 20 319 338 319 340 0.95 6 15 0.0022 0.24 13.6 4.4 1 23 521 543 521 543 0.98 7 15 0.0028 0.3 13.3 0.1 1 23 549 571 549 571 0.90 8 15 1.8e-05 0.002 20.2 0.1 1 23 577 599 577 599 0.97 9 15 0.00016 0.018 17.2 0.6 2 23 603 624 602 624 0.95 10 15 6.1e-06 0.00067 21.7 0.5 1 23 630 652 630 652 0.96 11 15 0.0048 0.53 12.5 2.1 1 23 658 680 658 680 0.97 12 15 2.1e-05 0.0023 20.0 0.4 2 23 688 709 688 709 0.96 13 15 4.2e-06 0.00046 22.2 5.9 1 23 715 737 715 737 0.99 14 15 2.5e-06 0.00027 22.9 0.6 1 23 743 765 743 765 0.98 15 15 0.0033 0.36 13.1 0.1 1 22 771 792 771 795 0.91
Sequence Information
- Coding Sequence
- ATGAATGACCCTACTGATTATGTCGTGTATGGCTATACTATCGGTAACCAAGTGTTCCAACTTAAACGAGACTTTGTGGCCCAACAAGATTCCCCAAAAATTGTCCAGGTGATACCAGCTGGAACAGTTGTTCATTCGGGACCATCGACAATCCGTATTCTCGAGAATTTTCAACTCCGTCAGCCCGCTCAACAACATTGCCAAACGGTTCTCGGTCAACATAATGATACCGCGATTCCCATAGTCGTTGAAAGTATTTCGCTACCCGTGAATAATGAATCCGATAAAACAAGCAACACAATTGTTGCAAATCAAGCGAATACGCAATTGATTGTAACTTCGGACTCCACCGCGTTGGTGAAACCCGAAAAGCTGAATGCCATTGCACCATGCTCGAAAGCAGATGCAGATGACACGAGAAACGAACTGAAACCAAAGAGAGTACCGGCGAAAATACGTAAAACGGTCCGCATTAAGCCACCAGATTTATCATTAGacacagaaaaacaaaacattaacAAGACTTCTACCAAAGCGAAAAGAGACTTTATCTATGAATGTGACATCTGCGACAGTCGTTTTCTAGCAGCGGTATCGCTTAGAATCCACAAAACTGGCCATAGCTATGGAACGCCCGAACAGAAAAAAGCATACCCGTGCCGCTTTTGCGGACGGCAATTTTCGCATCCTCAAACACTCGGCGATCACGAAAAGGTGCACATCGATGACCGCTACAATTGTGATGCATGTGGAGCCCGATACAGCTCGAAAAGTGGCCTCCGTAACCATTTGGGTAAAAACGAAGAATGCAACAGCAGCTACCAACGACAGAAGTTGGCTCGCAAGCAGGAGGAAGAAGAACTGAAGGAGCATAGCTGTGAGGTTTGCGGCAAAAAGTATCGTCACCGAAAGTCACTGCTGGAGCACCGCAGTTTGCACTTTCGAAACAAACAGTACCGGTGCGATCGATGCGGGGTAATGTTCGAAACGACTGGGGGATGGCGGAAGCATCGCGCCAACCAACGATGTGAGTTTAGTAAGAGTAAATATAGAGATCCGGGTGAGAGCGATGAGGTTTTCATACCGAAGGAGAGGAAACATTTTGCGGAACAGATTAAAAAGAAAGAAGTTAAATCGAATAAAAAAATAGAAATAGTCACTGTTCCTGCAGTAAATTTAGATGATGAAAATTCCGATCCCAATACCGACCATCTCAGCGAAGATGAAACTCCTCAAAACGCATTAAATGTCGATGAGGAAATTAAGGAAGAAAATTCGAGCGATAATGAGCTGCATGATTGGCCACTGGATACCCCATCGggagaaacaaaaatttctgggAAAGAAACATCTTTCGACACAGAAGTAAAAAATAACGCCGAAATTAATACAGATCGTAACAAGCTTGAAAATGATTCTCAGGCAGAGAGGTCTCCCAAAAACACAGGAGATAACACGATTGACTTAAACCTGCCAGAGGAAGCTCTCTCGAAGCAAGAATCAGTAGAAGATACCGATCTTAAAGAGCCATCATCCACAAGCAATCGCAAACCTAAGGTTCACCAGTGCCTAACGTGCAACAAAACTTTCGCGCGTagctttattttaaaaaatcatctcCGCAAGCACACAGGTGAGCGCCCATTTCTCTGCGACAGTTGTCCCAAATCATTCGCAGATGCAGCTTCTCTGAAAATGCACTCTGTGGTGCATACGGGTGAGAAACCCTTTCCGTGTCCGGAATGTCCGGCACGTTTCGCACGTAAAAGTGGCCTGCGCAACCACGTAACCATGCACTATAAGCTGCCGTGTGACGATTGTGACCAGAAATTTCCCTCGCGAAAAACTCTAATGCGTCACAAAGCCAAACATCAGGGCGTCCGGCCGTTTTTGTGTGAAATATGCTCGAAAGATTTCCGAACCAAAGCGGATATGAAAGCGCACATGCGAATCCATTCGAACGAAAAGCGTTATGCGTGCAAAATCTGCTCGGCGCGCTTCAACTGTCCGTCGACGTTACGGAGACATCGGAATGTCCATGCGCCACCCGAAACGCGTCCGGTTTGTGAGAGCTGCGGAAAGTCGTTCTCCTCTCGTCAAGCACTACAGAAACATGAAAACATCCATCGGGATCTGAAACCGTTCCAGTGCGATATCTGCTCCAAGTGCTTTCGCGTTAAAGATCACCTAAAAATTCATCAACGGTCCCATTCCGGTGACCGACCTTTCTCGTGCGATCTTTGTCCAAAAAGATTTGCAACAAATGGCGACCTGCGGGTTCACTACCGGCGGCACACCGGGGAGAAACCGTACACTTGTGACGATTGTGGGCTTGGGTTCGTAGTCACTGCAGGCCTGTATCGGCATCAGCAGCAAACTGGTCACCAAAGTAGCAAACCGACGGCTATCATTGTGCCGGAGTATACGAGGGCCACATAA
- Protein Sequence
- MNDPTDYVVYGYTIGNQVFQLKRDFVAQQDSPKIVQVIPAGTVVHSGPSTIRILENFQLRQPAQQHCQTVLGQHNDTAIPIVVESISLPVNNESDKTSNTIVANQANTQLIVTSDSTALVKPEKLNAIAPCSKADADDTRNELKPKRVPAKIRKTVRIKPPDLSLDTEKQNINKTSTKAKRDFIYECDICDSRFLAAVSLRIHKTGHSYGTPEQKKAYPCRFCGRQFSHPQTLGDHEKVHIDDRYNCDACGARYSSKSGLRNHLGKNEECNSSYQRQKLARKQEEEELKEHSCEVCGKKYRHRKSLLEHRSLHFRNKQYRCDRCGVMFETTGGWRKHRANQRCEFSKSKYRDPGESDEVFIPKERKHFAEQIKKKEVKSNKKIEIVTVPAVNLDDENSDPNTDHLSEDETPQNALNVDEEIKEENSSDNELHDWPLDTPSGETKISGKETSFDTEVKNNAEINTDRNKLENDSQAERSPKNTGDNTIDLNLPEEALSKQESVEDTDLKEPSSTSNRKPKVHQCLTCNKTFARSFILKNHLRKHTGERPFLCDSCPKSFADAASLKMHSVVHTGEKPFPCPECPARFARKSGLRNHVTMHYKLPCDDCDQKFPSRKTLMRHKAKHQGVRPFLCEICSKDFRTKADMKAHMRIHSNEKRYACKICSARFNCPSTLRRHRNVHAPPETRPVCESCGKSFSSRQALQKHENIHRDLKPFQCDICSKCFRVKDHLKIHQRSHSGDRPFSCDLCPKRFATNGDLRVHYRRHTGEKPYTCDDCGLGFVVTAGLYRHQQQTGHQSSKPTAIIVPEYTRAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -