Wsmi039761.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- zfpm1
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:53008110-53010644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.037 4.1 9.8 1.6 1 23 9 32 9 32 0.93 2 17 0.0034 0.37 13.0 0.9 1 23 38 60 38 60 0.97 3 17 0.011 1.2 11.4 0.2 1 23 65 87 65 87 0.98 4 17 0.0042 0.45 12.7 0.1 1 23 93 116 93 116 0.90 5 17 0.0055 0.59 12.4 1.3 1 23 137 160 137 160 0.97 6 17 1.8e-07 2e-05 26.5 1.5 1 23 166 188 166 188 0.98 7 17 3.1e-05 0.0033 19.5 0.6 1 23 194 217 194 217 0.96 8 17 0.0018 0.19 13.9 0.7 2 23 229 251 228 251 0.94 9 17 0.00084 0.092 14.9 1.5 1 23 289 311 289 311 0.99 10 17 3.9e-05 0.0042 19.1 2.3 1 23 351 373 351 373 0.98 11 17 8.4e-06 0.00092 21.2 3.8 2 23 380 401 380 401 0.98 12 17 4.8e-05 0.0053 18.8 1.8 1 23 409 431 409 431 0.98 13 17 0.73 80 5.7 4.3 1 23 438 461 438 461 0.95 14 17 4.8e-06 0.00052 22.0 1.7 1 23 643 665 643 665 0.98 15 17 0.061 6.6 9.1 5.1 1 23 671 693 671 693 0.98 16 17 0.0002 0.022 16.9 0.4 3 23 702 724 700 724 0.94 17 17 4.8e-05 0.0052 18.9 2.7 1 23 730 752 730 752 0.98
Sequence Information
- Coding Sequence
- ATGGGGGAAAATTCCGCAACCATTCACAGATGCAACCTATGCGCAGCATCCTTTCACACCAGGGCCCTCCTGGCACGTCACACTATTCAATTACACAAGGCAACTAAAAAATTCCGCTGCACGCAGTGTAGTGCGTCATTCAACTCGCAGAAGAACGTTAGTCTGCATCGTGCAATCCACGGCCCAAAGCCGTTCAAATGTCCCAAATGCATGATCATTTTCCGGCGCTACGCTACCTTAGTAGGCCACATCGAACGGCACTACGTTCCGGAGGATCACGTGTGTGTGGTGTGCAATCGAGAGTTTCCAACGGTTGATGATTTGAAGGCTCATGTGTATGAAGGTCATGAAACCGATAAAATTCAAATGCTGCCAAGAAAGAAAGCGAAAACTGCCGGTGCGAAGACCTACCAGTGCACATTTTGCGAGAATAAAGTATTTACCAAACTAAGTTTGCTTGAAAGGCATTTTCTTATACATACAAAGCAGAAACCTTTTGTTTGTAACATTTGTGGCAAATCCTTCAATCAAAAGAGCAGTCTCAAAACTCATTCACTTACTCACGATGATATTCGAGATTTCGTTTGCCTGCTCTGTGGTTTGAAGTTTTCGCAGAAAACAAACCTTAGAGTACATACCCTTAGGGTTCACCCGAAGAAAAATGTTCCACTCTCGGACCGACTGCCATGTCCATACTGTCCatgcattttcaaaaaattgggcAGTTTGAATGCACACAAGACGAAAATTCACGCTGCCATACTATCGAACCCGGTTCGATTGAACGAGGACTCAACAAATAATCAAGAAAGTTTAAAACAAGAGGCACCGATTATGCAACCACAATCACCACCTGGAATAATTTACAAATGCGAAACTTGCGAAATCAATTTTCACGATATGGCACAGCTGGAAAAGCACTTGAATCGACACTCGAGAAACACGAACATCACTAATGAGAGGACTCAACTTCAAACGCCGGAGATTATCCGACCCATAGTAGCCAACCGGAGTCAGTCACATATGCAAGGTGTAAATGAACAGCGTCGTTTTAGTTGTGATATTTGCTCGGCTGCCTTCAAAAAGTCCAGCCACCTTAAACAGCATGTCAAGTCTCATTACGGTATCAAAGGCAATCGGTGTGAAATTTGCGACAAAACTTTCACTACCAGTCACACACTGAAAGTGCATCGGAACAGTCACTGCCAAAACTCCCAATTGCATTACAAGTGCGAGCAATGTCCAACCCGGTTTAGTCTGCTGTCCAGTCTTCGTCGGCACACGAAACTGCACGACAATCCTGACCGCAGTTTCAGCTGCCCGTTCTGCAAACGTGCCTTCAAATGGTACCAAAACTGCAAAACTCACATCAGAAAGGTTCATCCTGAGGAGGCCAAAAATCTCAGCGAACGGTTAAGCCCACTTGCAACTCATGGGGGACAGACTGAAGCGATACAATTTGAAGAACTGGCAGCTGGTGAAACTATGATCGACCTGAGGAATTTACCAGAAAATGTCGGCATTGTCGACATTAGCAACCTCGGGAATTGTATTGTACGAATAGATGATCAATTGTACGAAATACCGTTTCAAATAGAAGCCAACGACGTGGGGGAAGGCTTCCTGCCAATCAGTTTTCATGAATCCTCAGCTAGAGAACATTCCGAACAACAAGAATCTAGATTAGATTCATCCGTGCCAACCGATAATATTGTTCTGGAAGCATCAGACGAAACCGTTTTTCAATACATTTATGAGTCTGCCGACGAAATTCCACAAGATATTGTCAACCAACAGCGTCGAGCAGTTTCGGATCCCGACAGATCTAAATCCGTCGGTGCCCCAACTAGATCAAAGCAACGAAAAATAACCAGCAAAAATGAACAGGATCTTTTCGGTGAAACCATTGAAGCGGGAAAGAAATGCTACCATTGCAAGGCTTGCGAGAAACCATTCAAAAAGCCGGCGGATCTACGACGGCATATTCGGACACACACGGGCGAACGTCCCTTCCACTGTTATCTTTGCTCGAAGAGTTTCACCCTGAAGGCGATTCTCCACGTGCATATGAAAACTCACGATCTCAAACGGGAAGCTATCATTTGTCCTGAACCGGGCTGTGGCAgaaaattttccagcaaaaccAGCCTAGATTTACATCATCGCATTCATACAGGGGACCGCCCATTCCGGTGTACGGTTTGCACGCTCACCTTTCGCACCTCTGGCCATATGCAGGCGCATATGACGTCCCATTCGCGGCTGACTGCGCGGCAGGAGCAGGACAATGCGGAACTCCGTTACGAACGCTAG
- Protein Sequence
- MGENSATIHRCNLCAASFHTRALLARHTIQLHKATKKFRCTQCSASFNSQKNVSLHRAIHGPKPFKCPKCMIIFRRYATLVGHIERHYVPEDHVCVVCNREFPTVDDLKAHVYEGHETDKIQMLPRKKAKTAGAKTYQCTFCENKVFTKLSLLERHFLIHTKQKPFVCNICGKSFNQKSSLKTHSLTHDDIRDFVCLLCGLKFSQKTNLRVHTLRVHPKKNVPLSDRLPCPYCPCIFKKLGSLNAHKTKIHAAILSNPVRLNEDSTNNQESLKQEAPIMQPQSPPGIIYKCETCEINFHDMAQLEKHLNRHSRNTNITNERTQLQTPEIIRPIVANRSQSHMQGVNEQRRFSCDICSAAFKKSSHLKQHVKSHYGIKGNRCEICDKTFTTSHTLKVHRNSHCQNSQLHYKCEQCPTRFSLLSSLRRHTKLHDNPDRSFSCPFCKRAFKWYQNCKTHIRKVHPEEAKNLSERLSPLATHGGQTEAIQFEELAAGETMIDLRNLPENVGIVDISNLGNCIVRIDDQLYEIPFQIEANDVGEGFLPISFHESSAREHSEQQESRLDSSVPTDNIVLEASDETVFQYIYESADEIPQDIVNQQRRAVSDPDRSKSVGAPTRSKQRKITSKNEQDLFGETIEAGKKCYHCKACEKPFKKPADLRRHIRTHTGERPFHCYLCSKSFTLKAILHVHMKTHDLKREAIICPEPGCGRKFSSKTSLDLHHRIHTGDRPFRCTVCTLTFRTSGHMQAHMTSHSRLTARQEQDNAELRYER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -