Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:27884192-27885970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.4e-06 0.00037 22.5 0.3 1 23 121 143 121 143 0.99

2 15 0.0013 0.14 14.3 2.3 1 23 149 171 149 171 0.98

3 15 1.5e-06 0.00016 23.6 1.2 1 23 179 201 179 201 0.99

4 15 0.0008 0.087 15.0 4.8 1 21 207 227 207 229 0.94

5 15 2.2e-05 0.0024 19.9 1.3 1 23 237 259 237 259 0.98

6 15 0.00054 0.059 15.5 0.8 1 23 265 287 265 287 0.98

7 15 0.00086 0.094 14.9 5.4 1 23 295 317 295 317 0.98

8 15 0.00078 0.085 15.0 5.0 1 23 323 345 323 345 0.97

9 15 0.00018 0.019 17.1 3.7 1 23 353 375 353 375 0.98

10 15 0.00069 0.076 15.2 2.6 1 23 381 403 381 403 0.98

11 15 1.7e-05 0.0018 20.3 1.8 1 23 424 446 424 446 0.98

12 15 0.032 3.5 10.0 4.3 1 23 454 476 454 476 0.97

13 15 3.7e-05 0.004 19.2 1.1 1 23 482 504 482 504 0.97

14 15 3.8e-05 0.0041 19.2 0.1 1 23 512 534 512 534 0.98

15 15 3e-06 0.00033 22.6 2.9 1 23 540 562 540 562 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.4e-06	0.00037	22.5	0.3	1	23	121	143	121	143	0.99
2	15	0.0013	0.14	14.3	2.3	1	23	149	171	149	171	0.98
3	15	1.5e-06	0.00016	23.6	1.2	1	23	179	201	179	201	0.99
4	15	0.0008	0.087	15.0	4.8	1	21	207	227	207	229	0.94
5	15	2.2e-05	0.0024	19.9	1.3	1	23	237	259	237	259	0.98
6	15	0.00054	0.059	15.5	0.8	1	23	265	287	265	287	0.98
7	15	0.00086	0.094	14.9	5.4	1	23	295	317	295	317	0.98
8	15	0.00078	0.085	15.0	5.0	1	23	323	345	323	345	0.97
9	15	0.00018	0.019	17.1	3.7	1	23	353	375	353	375	0.98
10	15	0.00069	0.076	15.2	2.6	1	23	381	403	381	403	0.98
11	15	1.7e-05	0.0018	20.3	1.8	1	23	424	446	424	446	0.98
12	15	0.032	3.5	10.0	4.3	1	23	454	476	454	476	0.97
13	15	3.7e-05	0.004	19.2	1.1	1	23	482	504	482	504	0.97
14	15	3.8e-05	0.0041	19.2	0.1	1	23	512	534	512	534	0.98
15	15	3e-06	0.00033	22.6	2.9	1	23	540	562	540	562	0.99

Sequence Information

Coding Sequence: ATGGAAATGGGAGAATCTGTTTCAATGTTAATGGAGGGAGAATCCGGGACGATAAAGGTGGAAGAGATTACAATATTCGATACTCAGTTGCATGTTATAAGAACTGATCTACCGCTCACCAAGAATGACGGACGCTCCTTCAGTGAGGCAACGGCATCACCATGTGGATCAAGGGTAGTGGAAGGTGATCCTGAAATCAACAACACTATCGATAAAATCGTTAAAGCAGAGATGGCTGCAGCAGTGGACGGTGAAATTGCCGAGCCTAGCTCAAGCAAGACTAATGAATTGGACACAAACTACGATACGCATCAAACAGAGAAAAATAAACACAACACGCAACACATCACGGATCGCTCCTATAAATGCCTCATTTGCGGGAAAGTGGTCGGGTTCAAGTCTTCTCTTGCAAGACATATGCGCCTCCACAGTGACGAGCGACGGTACAAATGCGACATCTGCGGTAAGGAATGCATATCAGTAACTAAACTTAACGAGCACAAGAAGTATCACACAGCCGGTGAGAACGAATTGTTCAAATGCGACTTTTGTGGGAAAGACTTCGTTTATCGCTCTTCCCTATTAAGCCATATGCTCACTCACAGTAACGAGCGACCACACAGATGCGACATCTGCGGAAAGGATTACAAATCAGCATATGATCTGAATAAACACAAGAAGTGTCACACAGCCCATGAGGATGAACTGCACAAGTGCGACATTTGCGGGAAAAGTTTCGTGGAGCGTTTTGTACTTGTAAAACATTTGAACACTCACAATGATGAGCGACGGTACAAGTGTGACATCTGTGGCAAGAATTACAAGGCAGAAACCGGTCTGAATCTTCACAAAAAGTATCACACATCCCATGAGGATAAACTGCACAAATGTGCCCTTTGCGGAAAATGTTTCGTGCAACGCTGCAGTCTCGTATTACATTTGGACACTCACAGTGACGAGCGACGACACAAATGCGATATTTGTGGCAAGGATTACAAAACAATAATTCATCTGAATCGAcataaaaagtttcacacaACTTATGAGGATGAATTGCACAAATGCGCCATTTGCGGGAAAAGTTTCATGCATCGTTTTGTACTTGTAAAACATTTGAACACTCACAGTGACGAACGACGGTACAAGTGTGACATCTGCGGCAAGCAACATAAAACAAAAGAAGGTCTCAACAAACACAGGAAAGCACATAACGACGAACAATCGTTCAAATGTGATGAAGAAAAGCGCCTCCACAGTGACGAGCGACCGTACAGATGCGACATCTGCGGCAAGAAATCCAAATCAGCAAGTTATCTTAATCAGCATAAGAAAAATCACACACTTGGTGAGGATGAACTGTATAGATGCGACTTTTGTGGTAAAGGTTTCGTTTGTCATTATTTACTATTGAAACACTTGTACGTTCACAGTGAGGAGCGACCGCACAGATGCGACATCTGCGGCAAGGATTACAAATCACCAGCTGGTCTGTATCAACACCAGAAGTATCACACATCTCATGAGGATGAACTGCATCAATGCGCCATTTGCGGGAAAGGTTTCGTGTTTCGTTACGCACTCGCAGCACATGTGGAAACTCACAGTGATGAGCGTCGGTACAAGTGCGACATCTGCGGCAAGCAGTACAAGACAAAAGGTTTTCTAAACAAGCATAGAAAATCACATAACGGTAAACAAACGTAA
Protein Sequence: MEMGESVSMLMEGESGTIKVEEITIFDTQLHVIRTDLPLTKNDGRSFSEATASPCGSRVVEGDPEINNTIDKIVKAEMAAAVDGEIAEPSSSKTNELDTNYDTHQTEKNKHNTQHITDRSYKCLICGKVVGFKSSLARHMRLHSDERRYKCDICGKECISVTKLNEHKKYHTAGENELFKCDFCGKDFVYRSSLLSHMLTHSNERPHRCDICGKDYKSAYDLNKHKKCHTAHEDELHKCDICGKSFVERFVLVKHLNTHNDERRYKCDICGKNYKAETGLNLHKKYHTSHEDKLHKCALCGKCFVQRCSLVLHLDTHSDERRHKCDICGKDYKTIIHLNRHKKFHTTYEDELHKCAICGKSFMHRFVLVKHLNTHSDERRYKCDICGKQHKTKEGLNKHRKAHNDEQSFKCDEEKRLHSDERPYRCDICGKKSKSASYLNQHKKNHTLGEDELYRCDFCGKGFVCHYLLLKHLYVHSEERPHRCDICGKDYKSPAGLYQHQKYHTSHEDELHQCAICGKGFVFRYALAAHVETHSDERRYKCDICGKQYKTKGFLNKHRKSHNGKQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -