Wsmi001778.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:18776628-18778919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.49 54 6.2 4.0 1 23 72 95 72 95 0.96 2 18 3.8e-06 0.00041 22.3 2.0 1 23 101 123 101 123 0.98 3 18 0.0039 0.43 12.8 0.2 1 20 129 148 129 151 0.92 4 18 8e-05 0.0088 18.1 1.5 1 23 157 180 157 180 0.97 5 18 1.7e-05 0.0018 20.3 1.4 1 23 215 237 215 237 0.98 6 18 0.025 2.8 10.3 0.8 1 23 243 265 243 265 0.93 7 18 3e-06 0.00033 22.6 0.3 1 23 271 293 271 293 0.98 8 18 0.016 1.7 10.9 0.5 1 23 299 322 299 322 0.97 9 18 0.013 1.4 11.2 0.4 1 23 339 360 339 360 0.98 10 18 0.00018 0.019 17.1 0.8 1 23 365 387 365 387 0.95 11 18 0.0093 1 11.7 3.0 1 23 393 415 393 415 0.95 12 18 2.5e-05 0.0028 19.7 0.9 2 23 422 443 421 443 0.96 13 18 6.6e-06 0.00072 21.6 2.9 1 23 449 472 449 472 0.98 14 18 0.00093 0.1 14.8 3.2 2 23 499 520 498 520 0.96 15 18 4.7e-06 0.00052 22.0 0.8 1 23 526 548 526 548 0.99 16 18 8.6e-05 0.0093 18.1 4.5 1 23 554 576 554 576 0.98 17 18 1.6e-05 0.0018 20.3 3.9 1 23 582 605 582 605 0.98 18 18 1.8e-05 0.0019 20.2 2.8 1 23 630 652 630 652 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAAATCATTCAAATAAAGGTAGAAGAGCTTATAATATTCGACACTTTGCCGGCGGAAGAGGAAACTCCACTCGCTAGCAGCGATCGGTGCTCCGGCGGAACGACTGTAACGAACGCACAGAGGGATGGTTCAGCTGGTGTGATACAAGAACATGAAGTTGGCAAACAGAACTGCGAGGACCACAGAAGTCAAACACGAAAACGTCGATTTGCCTGTAATATCTGTTGTGAAAAATTCAGCACAGCTAAACGTTTGCAGTACCACAAAAGCACTCGACATGAAGAAAACCGGTACTTCCAGTGTGACATATGCAAACGAAGTTTTTTCCAGAAGTCATATCTATCGGTTCACATGAATTTACACCGCACGGATAGTCCATATGAGTGCTTGATTTGCAACAGAAAATTTACAAGCGAATGGGTTCTCGCACAGCATATGCCCAAACATAGCGATGAGCGACCCTTCAAATGCGACCTCTGTGACGCGTCATTCAAGAGAACTGGATCTTTGAATGCTCATAGACACATGCTCCACAAGGTCGGTCCCTCCCAAAGACGCCTTTCTTTCTGTTGCAGTAACTCGGACGGTTTGAAAATTATTAGCGATACCGATGTTGGTGATCATCCACGGAAAAAATACATTTGTGACATCTGCAACAAGGAGTATAGCACAAAATACCGACTAAAGGATCATAGAAGAATCCACACCGGGGAACAACCTTTTGCGTGCGATATCTGCAGCGAAACATTCAGCACAATTGACCGTTTCAGATACCATAAGAGTGGTCACACGGAAGACCGGAACTTCCAGTGTGACGTATGCGATAAAAGCTTCCCAACTAAACCTCGTCTCGTAGATCATATGCGCAATCACAGCGATGAGCGACCTTTCAAATGTGGAATCTGCGGCACACTTTGGAAAAGACTCAAGACTTTAAATACTCATTTGCGAAATGTCCACAGAGTCGATACCTCTCAACTCAACTCCAACAATCATCTCCAGGAAAAGTACGTTTGTGTGCTCTGTAACAAGGAGTACAACGCAAAAGGGTTCTCGAACCATATGAAAATTCACTCCGGGAAAACGTTCCCATGTGATGTTTGTAACAAATCATTTAGCACACCTCAACGGCTGCTGCACCATGGGGGTACTCATACTAGGGACCAGAGGTTCCTGTGTGACATATGTGAGCAGTTGTTTTTACGGAAATCACATCTTTCGTCGCACATGAAAAAACACCGCTCAGATTGCCCTCTTAAGTGCCTCATTTGCGATGAAAGATTCACAGATGCCTTTCATCTCGAAAACCATATGGTCCGTCACAGCGATGAGCGCCCCTTTAAATGCGACATCTGTGACAAATCATACAAAAGAGATAAAGCTTTACAGCGTCATATTTGCAAAATCCACGATTCTTACCCTAGTTTTTCTTCTTTCAATTGCAGTAAATTGGAAAAACCAAAGAACATCACCAGAAGACAACATTTAGAATGTGATATCTGCAACGAAAAATTCCACTCGAGTACAAGTTTACATTACCATATGAGGGCCCATACAGGAGTCCCGAATTTTCAGTGTGACATATGCGAACGACGTTTTTCCCTGAAGCCACAGCTGCGGTCCCACATGAAAGTACACCTTCCCGACTGCCCACATACGTGCCAGATTTGCGATAGAAAATTCTCAAATAATCATCGTCTCGAAGATCATATGCTGAGCCACACCGATGAGCGACCCTTCAAATGTGACATCTGTGACAGTTCATTCAAGAGGTCTAAACATGTGATGCGTCATATGAAGAAGGTCCACAGTGTTGATCTCTCTCCGAGCAACGCGGAAAGTTTGACGCCAAACCAGAGCCTAAGCAATAATTCAGCAGTATACAGCTGCAACATATGCGGCAAACAGTACAAACAAAAATGCTCACTTCGCATACATATGGATCTTCATGAGACTACTGTTGTGAGATATTAG
- Protein Sequence
- MEQIIQIKVEELIIFDTLPAEEETPLASSDRCSGGTTVTNAQRDGSAGVIQEHEVGKQNCEDHRSQTRKRRFACNICCEKFSTAKRLQYHKSTRHEENRYFQCDICKRSFFQKSYLSVHMNLHRTDSPYECLICNRKFTSEWVLAQHMPKHSDERPFKCDLCDASFKRTGSLNAHRHMLHKVGPSQRRLSFCCSNSDGLKIISDTDVGDHPRKKYICDICNKEYSTKYRLKDHRRIHTGEQPFACDICSETFSTIDRFRYHKSGHTEDRNFQCDVCDKSFPTKPRLVDHMRNHSDERPFKCGICGTLWKRLKTLNTHLRNVHRVDTSQLNSNNHLQEKYVCVLCNKEYNAKGFSNHMKIHSGKTFPCDVCNKSFSTPQRLLHHGGTHTRDQRFLCDICEQLFLRKSHLSSHMKKHRSDCPLKCLICDERFTDAFHLENHMVRHSDERPFKCDICDKSYKRDKALQRHICKIHDSYPSFSSFNCSKLEKPKNITRRQHLECDICNEKFHSSTSLHYHMRAHTGVPNFQCDICERRFSLKPQLRSHMKVHLPDCPHTCQICDRKFSNNHRLEDHMLSHTDERPFKCDICDSSFKRSKHVMRHMKKVHSVDLSPSNAESLTPNQSLSNNSAVYSCNICGKQYKQKCSLRIHMDLHETTVVRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -