Wsmi001738.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
-
Assembly
GCA_029784165.1
Location
CM056644.1:18564234-18569367[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00014 0.015 17.4 1.3 1 23 99 121 99 121 0.99
2 20 6.6 7.2e+02 2.7 0.4 1 13 127 139 127 141 0.85
3 20 0.00012 0.013 17.6 1.1 1 23 242 264 242 264 0.99
4 20 0.0013 0.14 14.4 0.9 1 23 270 292 270 292 0.97
5 20 0.028 3 10.1 0.4 1 23 298 320 298 320 0.98
6 20 8.2e-05 0.009 18.1 0.9 2 23 327 348 326 348 0.97
7 20 0.00023 0.025 16.7 2.7 1 21 354 374 354 375 0.94
8 20 0.0023 0.26 13.5 0.1 1 23 412 434 412 434 0.98
9 20 0.075 8.2 8.8 1.9 1 23 440 462 440 462 0.95
10 20 0.001 0.11 14.6 0.5 1 23 468 490 468 490 0.98
11 20 1.3e-06 0.00014 23.8 1.9 1 23 496 518 496 518 0.99
12 20 2.7e-06 0.00029 22.8 0.9 1 23 524 546 524 546 0.99
13 20 0.00085 0.092 14.9 0.2 1 23 575 597 575 597 0.98
14 20 0.00024 0.026 16.7 1.9 1 23 604 626 604 626 0.97
15 20 0.0026 0.28 13.4 0.2 1 23 632 654 632 654 0.98
16 20 4.2e-05 0.0046 19.0 2.8 1 20 660 679 660 682 0.96
17 20 0.0018 0.2 13.9 2.5 1 23 688 710 688 710 0.99
18 20 0.00065 0.071 15.3 0.8 3 23 737 757 735 757 0.98
19 20 2.2e-06 0.00024 23.0 0.9 1 23 763 785 763 785 0.98
20 20 4.1e-05 0.0045 19.1 0.9 1 21 791 811 791 812 0.94

Sequence Information

Coding Sequence
ATGGAGGAATTTAGCGTAACGAAGGTGGAAAAAGCCACTTCAATCAAAGTGGAAGAACTTATATTACCCGAAGTTGTGGCTACGGAAAAGGAAAATCCGCTCGCCAGTAGTGATAGGTGCTCTGATGACCCGACTGTAAGGAAAGTATCTACTGATGTGAAACAAGAACCTGGGACGGACATCAATGAAGCTGAGACTGAGACAGCTTGTGACGAAATCGCAGCTTCTAGCTTCAGCAACTCGAACGGCTCGGAAATGCGCAATACCAATATTGGTGACGATCGACGGAAAAAGTACGTCTGTGAGTTTTGCAACAAagaattaagctcaaaatacaAGCTGGCGGATCATAGAAGAACTCACACCGGGGAACGACCCTTTGAGTGTGATCTTTGCAACAATACTTTCCACTCATCTGTGAGCGAAATGAAGGAGCTTAACCGAATGAGGGAGGAAGAATTCACTTTAATAAAGGTAGAAGAACTTATAATATCCGATGTTGTTGCTACGGAGAATGAAACTTCGCTCGCCAACAGCGGTCGGTGCTTCGAAGAACCGACTGTTACGAACGGCTTGAGGAAACAATCTATTGATGTGAAGCAAGAATCTGTGGCGGACATCACCGATGAAGATGAAACTAAGGCAGCTTGTGATGAAATTGCAGCTTCTAGCTCCAGCCACTCGAACGACTCTGCCGATGTTGGTGATCAATCACGGGAAAAGTACGTTTGTGAATTTTGCAACAAAAAGTTAGGCACAAAGTCCAGCTTGGTGGACCATAGAAGAACTCACACCGGGGAACGACCTTTTGCGTGTGTTATCTGCAACGAAACATTCAGCACAGCTCAACGTCTGCGGTACCATAAGAGTACTCATACGAGCGACCGGAAGTTCAAGTGTGACATATGTGCGCAACGATTCCTACTTAAATCACGTCTTGCATGGCACATGAAGATACACCGCTCAGATTACCCTCAGAAGTGCTTGATTTGCGATGAAAGATTTAAATATCCCGAACATCTCGCAAGCCATATGGTTCGTCACAGCAATGAGCGACCCTTCAAATGCGATATTTGTGACAAATCTTATAAAAGATCTAAAGCTTTAAAAGGCCATACCTGCAAATCATACGATCCCTCCACGGTGAAAGATAAATGGCGGAAAAGGAAGAATTCCAACTCGAAAGGTTCGAAAAAGCGCAAAACCGGTGTTGGTGATCAAccaacaaaaaagtatgtttgtGAAATCTGCGGCAAGGAATATGGGTCTAAATACATTTTAGAGGGTCATAGAAGAATACACACCGGGGAACGACCCTTTGCGTGTGATCTTTGCAACAATACATTCCGCACAGCTGAACGTTTACACTACCATAAGCAAGCCCACACTACAGACAGGGATTTTGAGTGTGACATATGCAAGCGACGTTTCAGCATGAAAGCAATTCTATCATCCCACATGAATATTCATCGCACAGATTACCGTTATAAATGTCTGATTTGCGATAAAACATTCGTATATAATTACCAACTACTATATCATATGCGCAGTCACAGCAATGAGCGACCCTTTCAATGCGACATCTGTGACGCATCGTTTAAGAGACGTTATGTCCTAAAAGAGCATATGAAGATGCACAAAGTCGAACCATTTCTATCAAGcAACGTAGAAGCTTTGGAACCGAATCAAGCTTATGTCAGGCAATGCAACAGATCAAAGAAATATACCTGCGATATATGTGGCAAGCAGTACAAACAAATGATAGCTCTTGACCTACACCTGAAACTTCATCAGAGCAACACAAAACAACATGAGTGCACGATTTGTGGAAAAACAAATTCGAAAAGAGCATTGCTGAAAAGGCACATGCTAAGTCACACGGAAGAACGACCTTTCAATTGTGACATTTGCGGCTCATCTTATAAGTCAGCTAATGCTGTTGAAGTCCATAAGAAAACGCACACCGCCGCGAGACCATATGAATGCGAAATTTGCGGAAAAGGGTTTGCTACTCGTTACAAGCTAAAGCGGCACTTGTTTTGTCATACTAATGAACGACCTTTCAAATGCCATATTTGCGGTCTAGCACTGAGGTCAGAATATAATCGAAGAAATCATGAACGAAAGCATAATTCCAATCGTGGAAGCTTCACATCCGAGACAAACCTCGTGACGCATGATAGTGCGTCTGAAGAACAACTTTTCGGTTGTGATATCTGCAGTTCATCGTATAAAACAGCGAGGAATTTGAGTAAACATATGGAGAAGCACACCTCCGAGGGCATGTATAAATGCGAAATTTGCGACAAAACATTTCCATATTCTTACAAACTAACGCTGCACATGGTTAGCCATACTAATGAACGACCGTTTCAATGCAATAGATGCGGCTTATCATTCAAGTCGAATTCTAATCTACGAGGTCATGAAAAAAAGGTACAATGTACGAGTAAACGGAAAAGCACCTAA
Protein Sequence
MEEFSVTKVEKATSIKVEELILPEVVATEKENPLASSDRCSDDPTVRKVSTDVKQEPGTDINEAETETACDEIAASSFSNSNGSEMRNTNIGDDRRKKYVCEFCNKELSSKYKLADHRRTHTGERPFECDLCNNTFHSSVSEMKELNRMREEEFTLIKVEELIISDVVATENETSLANSGRCFEEPTVTNGLRKQSIDVKQESVADITDEDETKAACDEIAASSSSHSNDSADVGDQSREKYVCEFCNKKLGTKSSLVDHRRTHTGERPFACVICNETFSTAQRLRYHKSTHTSDRKFKCDICAQRFLLKSRLAWHMKIHRSDYPQKCLICDERFKYPEHLASHMVRHSNERPFKCDICDKSYKRSKALKGHTCKSYDPSTVKDKWRKRKNSNSKGSKKRKTGVGDQPTKKYVCEICGKEYGSKYILEGHRRIHTGERPFACDLCNNTFRTAERLHYHKQAHTTDRDFECDICKRRFSMKAILSSHMNIHRTDYRYKCLICDKTFVYNYQLLYHMRSHSNERPFQCDICDASFKRRYVLKEHMKMHKVEPFLSSNVEALEPNQAYVRQCNRSKKYTCDICGKQYKQMIALDLHLKLHQSNTKQHECTICGKTNSKRALLKRHMLSHTEERPFNCDICGSSYKSANAVEVHKKTHTAARPYECEICGKGFATRYKLKRHLFCHTNERPFKCHICGLALRSEYNRRNHERKHNSNRGSFTSETNLVTHDSASEEQLFGCDICSSSYKTARNLSKHMEKHTSEGMYKCEICDKTFPYSYKLTLHMVSHTNERPFQCNRCGLSFKSNSNLRGHEKKVQCTSKRKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-