Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:26346276-26361106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00066 0.072 15.3 1.0 1 21 95 115 95 116 0.95

2 17 5.2 5.7e+02 3.0 0.3 2 13 149 160 149 161 0.88

3 17 1.3e-05 0.0015 20.6 3.8 1 23 373 396 373 396 0.96

4 17 6.1e-06 0.00066 21.7 0.4 2 23 403 424 402 424 0.98

5 17 4.9e-06 0.00053 22.0 0.4 1 23 430 452 430 452 0.98

6 17 6e-05 0.0065 18.5 0.7 2 23 459 480 458 480 0.96

7 17 1.2e-06 0.00013 23.9 4.1 1 23 486 508 486 508 0.99

8 17 9.1e-06 0.00099 21.1 0.4 1 23 564 586 564 586 0.98

9 17 1.2e-05 0.0013 20.8 2.5 2 23 593 614 592 614 0.98

10 17 1.3e-05 0.0014 20.7 0.7 1 23 620 642 620 642 0.98

11 17 4e-05 0.0044 19.1 0.1 2 23 648 669 647 669 0.97

12 17 1.4e-06 0.00015 23.7 1.7 1 23 675 697 675 697 0.99

13 17 1.2e-05 0.0013 20.8 1.2 2 23 758 779 757 779 0.98

14 17 9.1e-07 0.0001 24.3 1.0 1 23 785 807 785 807 0.99

15 17 0.00056 0.061 15.5 0.5 1 23 813 838 813 838 0.97

16 17 4.7e-05 0.0052 18.9 0.2 2 23 844 865 843 865 0.97

17 17 2.9e-06 0.00032 22.7 0.6 1 23 871 893 871 893 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00066	0.072	15.3	1.0	1	21	95	115	95	116	0.95
2	17	5.2	5.7e+02	3.0	0.3	2	13	149	160	149	161	0.88
3	17	1.3e-05	0.0015	20.6	3.8	1	23	373	396	373	396	0.96
4	17	6.1e-06	0.00066	21.7	0.4	2	23	403	424	402	424	0.98
5	17	4.9e-06	0.00053	22.0	0.4	1	23	430	452	430	452	0.98
6	17	6e-05	0.0065	18.5	0.7	2	23	459	480	458	480	0.96
7	17	1.2e-06	0.00013	23.9	4.1	1	23	486	508	486	508	0.99
8	17	9.1e-06	0.00099	21.1	0.4	1	23	564	586	564	586	0.98
9	17	1.2e-05	0.0013	20.8	2.5	2	23	593	614	592	614	0.98
10	17	1.3e-05	0.0014	20.7	0.7	1	23	620	642	620	642	0.98
11	17	4e-05	0.0044	19.1	0.1	2	23	648	669	647	669	0.97
12	17	1.4e-06	0.00015	23.7	1.7	1	23	675	697	675	697	0.99
13	17	1.2e-05	0.0013	20.8	1.2	2	23	758	779	757	779	0.98
14	17	9.1e-07	0.0001	24.3	1.0	1	23	785	807	785	807	0.99
15	17	0.00056	0.061	15.5	0.5	1	23	813	838	813	838	0.97
16	17	4.7e-05	0.0052	18.9	0.2	2	23	844	865	843	865	0.97
17	17	2.9e-06	0.00032	22.7	0.6	1	23	871	893	871	893	0.98

Sequence Information

Coding Sequence: ATGATGATGGTCGTCATCCACCCCGAGAGCAAACCCCCCGACGGAAGTGGCCGGTATCATTTGCAGCAACAAACGACGACCGCACCTATGACAATGACCAGCGATTATGTAAAGCAGGCGATCGTACCTCAGGTCGCGACGACACTGGAACCGGCCAAAATAGTAACACCCCAGCCGCAATCGTGCAAGTGCGAATTCTGCGAATATCTCCAGGCGAATCGAATCAGCTTAGGAGGTTCCGGTGGTTTCGAGACACCGACCGAGTCCACCGGGGATCATGTTTTTCAATGCGAGTTCTGCGGGGAAGGATTCGTTAATCAGACTGCCTTCAACAGGCACCGCTGCGGAAGTACCGATATTCAGGTGTACCGCTGCGAGTCATGCCGGAAGGAATACGGAACATCTCGAACCGAGTCCAGCATTAGCCGGCTGGAAGGAAGAGGAAAATGTGATATATGCAATAGAAACTACGTGCAATCAACGCCGGGAGAAGTGGGCGGAGCAACCGTGACGCTTTTTGGGCAGGTTGGACGCCCTGCCCTGGCGGAGGCCTCCAGCTACAGCAGCAAGGCTTCCGTCTCCGATAGTCCGATGGAACACGACCTCAGCAGTATTGAACCGTTTGGTTCGGATAGTGAATGTATTAGTGAATTGTTAACGGACGAAGTGTCTTCTTCGGCCGCGACAGCGTCGGAACCACAGCAAACGAGTCTCCCACTGGCGAAAACCTACTTCGTGCTGGGAAATCTAGATTTACAGCAACAAATCGCCACCAGCGGGGCGAGCGCTGGAGCGGGAGGAGGTTCCTACATCCAGAATGCCAAAATTAGTAGCGAATCTAGTGTTACCAGTCTGCACCAGTACGACAAGTACGAGGATGAAGACTATTCGTCTATGTCAGAAGATGAAGCTATTGTTCCAATAGAACCCTATGCCAAATCGCCAAATCAGGAGCAAGCCAAAACCGAGTTGCCAATCCAGGAAACGATCATCGACACCAGCAGCAATGTTGGTCTGCCGTTCTGCACCGCCGGGCTGGTGTCGATTGCCTCCGAGGAAGAAGGCAAATGTGACTCATCGAGTAAGGGTCCGGACGCGGGCCAACCGGAGCGTCCCTTCAAGTGTCACATATGCGAACGTTCCTATCGAAACCACAAGAACCTGAAGGCCCACATCAAGGGTGCCCACGAAGGGGTCCGGGCGAATCAGTGCGAAATTTGCGGGAAGAACTTCTCCGGCAGTAGCTACTTGGTGATACACCGACGGCGGCACACCGGCGAACGGCCTTTTAAGTGCAACACCTGCGGGAAGGCTTTCGTCGACAGTCGAGCCTTGTCGGTGCACACCCGGTTGCATACACCTGGCAGCCGGCTTAAGTGTATGAAGTGTGAAAAAACTTTCTCCAGCGCATCAGCACTGACCGTGCATAACCGACTGCACACCGGAATTCATCCGTACAAGTGTGAAATATGTGAAAAAACTTTTCCCCAGTACAACAATTTGAAGCATCACATGAAAAAACACGAGGCGGCCACCGAACAGCGGCAGGCATCCCCTTTGGAAGCCACTTCCGGTCTGTGTTCCAGTAGTAGCAGCAATAGTAGCAGTAGTATTAGTGGCAGTAGTAGTTGCGGCAGTAGTACCATTAGCAGCAGTAGTGGTATTAGCAGTTCGGGTTCTACGTTGGAGTACAAGTGCAACGTTTGTGGTAAACTGTTTGGAACCTCGGAGGAACTGCAGAACCACCTGAACCAGCACTGCAAGGATCGACCGAACCAGTGTGAGTTCTGCTCCAAGGTGTTTCCTCGGTCGTCTCATTTGATTATCCATCGGCGACGGCACACAGGGGAGCGTCCATTCAAATGTAAATACTGCGAGAAGGCGTTTGTGGATTCGCGGGCATTGTCTGTACACACCAGGCTGCACACGGGTGAAAGGGTAACCTGTGATATCTGCCTGAAAACATTCGCCAGTAGCTCCGGATTGATCGTCCACCGGCGAATTCACCTGGGCATTCACCCGTACAAGTGTGACTACTGTCCAAAGTCTTTCGCCCAGTCAACTGCCCTCAAGTATCACCTAAAAAAGCACGACACCGCCAGTCTGCCCTCGAATAGCGAGGCCAACAGCCCGGATGCCACTGCCGTTACACAACAGAACGATTCCAGCTTGGAACAGCTGTCGGATCAGTCGATAAGCTCACCTCAGCTTCCACAACAACACCTGCAACAGCCGCCACAACAAGAGCAACAGTTAAAAACCGGCCACGTTAAGTGTCAGATCTGCAACAAAAATTTCCGTTCGGTCGAGTATTTGGCCCGACATCGCCGTACGCACTCCGGTGAACGTCCCTTCCAGTGCGAAATCTGCGGCAAGAATTTCAGCACAATGAGCTACCTAGTGATTCATCGGCGGCGGCACACCTCGGAACGACCCTACAAATGCCCACACACGGACTGCGTCAAAGCCTTCGTGGACAGCCGTGCCCTGCAAGAGCACAGTCGATCGGTACATTCGAAGATTCGCGTCCCCTGTGAGACCTGCTCCAAGACCTACTCGAGCGTCAGTAACCTGATTGTTCACCGTCGCATCCACAGCGGAGTCCATCCGTTCGAGTGCGACATCTGCGGGCGATCTTTCGCCCAGAAAAATGCCCTCAAATACCACCTCAAGCAGCATGTTAGCAAACAGGAAACGGCGAACATCCAACTGAAGGCACAACCATAA
Protein Sequence: MMMVVIHPESKPPDGSGRYHLQQQTTTAPMTMTSDYVKQAIVPQVATTLEPAKIVTPQPQSCKCEFCEYLQANRISLGGSGGFETPTESTGDHVFQCEFCGEGFVNQTAFNRHRCGSTDIQVYRCESCRKEYGTSRTESSISRLEGRGKCDICNRNYVQSTPGEVGGATVTLFGQVGRPALAEASSYSSKASVSDSPMEHDLSSIEPFGSDSECISELLTDEVSSSAATASEPQQTSLPLAKTYFVLGNLDLQQQIATSGASAGAGGGSYIQNAKISSESSVTSLHQYDKYEDEDYSSMSEDEAIVPIEPYAKSPNQEQAKTELPIQETIIDTSSNVGLPFCTAGLVSIASEEEGKCDSSSKGPDAGQPERPFKCHICERSYRNHKNLKAHIKGAHEGVRANQCEICGKNFSGSSYLVIHRRRHTGERPFKCNTCGKAFVDSRALSVHTRLHTPGSRLKCMKCEKTFSSASALTVHNRLHTGIHPYKCEICEKTFPQYNNLKHHMKKHEAATEQRQASPLEATSGLCSSSSSNSSSSISGSSSCGSSTISSSSGISSSGSTLEYKCNVCGKLFGTSEELQNHLNQHCKDRPNQCEFCSKVFPRSSHLIIHRRRHTGERPFKCKYCEKAFVDSRALSVHTRLHTGERVTCDICLKTFASSSGLIVHRRIHLGIHPYKCDYCPKSFAQSTALKYHLKKHDTASLPSNSEANSPDATAVTQQNDSSLEQLSDQSISSPQLPQQHLQQPPQQEQQLKTGHVKCQICNKNFRSVEYLARHRRTHSGERPFQCEICGKNFSTMSYLVIHRRRHTSERPYKCPHTDCVKAFVDSRALQEHSRSVHSKIRVPCETCSKTYSSVSNLIVHRRIHSGVHPFECDICGRSFAQKNALKYHLKQHVSKQETANIQLKAQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00948986;
90% Identity: -
80% Identity: -