Wsmi055809.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:275427899-275438618[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0001 0.011 17.8 2.1 2 23 23 44 22 44 0.96 2 18 0.0014 0.15 14.3 2.0 1 23 50 72 50 72 0.97 3 18 0.0001 0.011 17.8 2.3 1 23 253 275 253 275 0.97 4 18 0.0035 0.38 13.0 1.6 1 23 280 302 280 302 0.95 5 18 0.00011 0.012 17.7 0.7 1 23 308 330 308 330 0.97 6 18 6.7e-05 0.0073 18.4 0.6 1 23 336 358 336 358 0.98 7 18 5.9e-06 0.00064 21.7 1.7 1 23 364 386 364 386 0.98 8 18 2.5e-06 0.00028 22.9 0.4 1 23 392 414 392 414 0.98 9 18 8.9e-06 0.00097 21.2 0.4 1 23 420 442 420 442 0.99 10 18 9.4e-05 0.01 17.9 1.5 1 23 448 470 448 470 0.97 11 18 3.5e-06 0.00039 22.4 0.4 1 23 476 498 476 498 0.98 12 18 1e-05 0.0011 20.9 0.7 1 23 504 526 504 526 0.98 13 18 7.5e-06 0.00082 21.4 1.0 1 23 532 554 532 554 0.98 14 18 0.00011 0.012 17.8 0.5 1 23 563 585 563 585 0.99 15 18 3.7e-05 0.0041 19.2 4.0 1 23 591 613 591 613 0.99 16 18 0.0016 0.18 14.0 1.9 1 23 619 641 619 641 0.98 17 18 9.6e-07 0.0001 24.2 1.0 1 23 647 669 647 669 0.98 18 18 0.00049 0.054 15.7 1.1 1 23 675 697 675 697 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATATCAGCGGCGAAAATTCCGCTCAAGATATACACACCGGTGACAAGAAAGACAAGCTGAAATGTTCGATTTGTGATAAAAAGTTCTTTTCCGAGCGTAATTTATCAAAGCATACGAACTTGCATACTGGTTCTGCACCGTACATATGTGAAACCTGTGGCAAACGCTTCAAGGAAAAGCAGACTTTTGATAATCACAAACTTTCGCACAATGGAGATAAAATGCACAGagatctgatagctggTTTAGGCAAGAAACGTCCTAACTTGACCGTGTTTATTAAGGAGATTTTGATCCAGCGGTTGGTGTACGATGCAGTGCAGGATGCCGGTGGTGAAGACGAAATTGGTATCGCCAAGTCCTTAATCTATTACACTCGCGTTTCACATAGCCGATATGTTGAATTGTTGAAGACAAAGAAGAAGGAAAATTCAGATCAAGATGAAGAAGCCAGAAAGAAGAATGCCACGGCCCGTGCTCTTGAAGCTAATGTGTTTAAGTATGTACGGATAATGAACACAATGGAACCCGAAATACGGCCTCTTGTACAGGTCTACCCTTTCAACATTAAACACGAGTCAAGTTTTGACATAGACGATTCCGTTTCGGTCACATCCGACCAAAAACTGTTGCTTAATTCAGTCGAACCTATACATTGCCGTGGGGAAAGCATTGAACCTCCACAGTTGCTAGCTGTTGAAGACAACCCAGATGGTGAGAAGTGTGCTCCATTCGTCCCCAAACGAAAGTTCAAATGCTCTGTTTGTGATAAAGAATTTACCCAACGCCATAGTCTTGTTTATCACGAAAGCGTTCACAGTGACGAACGGCACCAGTGCGATGTTTGTGGTAAAGTCTTCCTCCGGCTGAAGAGTTTGGAAACGCACAGCTTCATGCACACACAGGCCAACACCCACATATGCACCTCTTGTGGAAAAGGCTTTGCTAACAATGCTCGTCTGGTTCAGCATATGATGAGACATAATGGTAAGCGGAAACACAAGTGTGAACAGTGTCCAATGGCTTTCATCACCAACGTGGAACTAAAATTGCACACACGCATTCACACTGGCGAAGAGCCATTCAAGTGTGCTGTATGCGGCAAAGGATTCAAATCGTCCAGCTATCGGACCCAGCATATGCGAAATCACACAGGAGAAAAACCGTATGAGTGTTCTGTGTGTGATAAACGTTTCTACGCCAGTAGCGCACTGACGATTCACATGCGTAATCATACAGGGGATAGGCGCTACAAGTGTGAAATTTGTGGTAAAGCTTTCCTAGAGCCAAGTCACCTGACTGAGCATGTTCGCATGCATACTGGTGAGCGTCCTTTTAACTGTGATATATGTGGTAAAACCTTCGCCTATGCAAGCGGCCACAGACGTCACATGCTTCGGCATGCCGGAAAGCGCTCCTTCAAATGCGACGAGTGTGGCAAAGAGTTCAGTTCCACCAGCTATCTGGCTATTCATGTGAAGCTGCACAATGACGAACGATCTTTTATATGTGACATATGCGGTAAAGGATTCACCGGAACCGCTCATCTGACCCAGCATAAACGAGTTCATATTTTGGAACGGGCGCATAAATGTGACTTCTGCGACAAGGCATTTGTCAGTCCTACTGACCTGGGAAAGCACGTACGCACGCACACGGGTGAGCCGGCGTTACGACCCTACCAATGCGAAGTCTGTTTCAAATCGTACGCTTCGAGCTGGTTGGTGTCACAGCATATGCGTAGCCATACTGGCGAAAGACCGTTCAAGTGCGATATGTGTGGTAAAGAATTTCTTCGCAATTATCACCTCAAACAGCACCGGCGCGTCCACACCGACGATCGGCCCTTCGAGTGTGACATTTGCAAGAAAGGATTTTTCGACAACACCGAACTCAAGTTCCACAGGCGGTCGCACACGGGTGAAAAACCACACCGCTGCGAGCTGTGCGACAGAGCCTTCACCCGTCCGAGTGAACTGAACGTGCACAAGCGTGTTCACGCTAACGGGCCGTTACATAAGTGCGGAGCCTGCGGGAAGGAATTCGTACAGATAAAAGCTTACAACAGACATCAGAAGATACACAAAGTTGACGCCATAAAGGATGCAGAGCGAGACGAGATAACACTTGACGAGTCGCAGGATCCCTAG
- Protein Sequence
- MEDISGENSAQDIHTGDKKDKLKCSICDKKFFSERNLSKHTNLHTGSAPYICETCGKRFKEKQTFDNHKLSHNGDKMHRDLIAGLGKKRPNLTVFIKEILIQRLVYDAVQDAGGEDEIGIAKSLIYYTRVSHSRYVELLKTKKKENSDQDEEARKKNATARALEANVFKYVRIMNTMEPEIRPLVQVYPFNIKHESSFDIDDSVSVTSDQKLLLNSVEPIHCRGESIEPPQLLAVEDNPDGEKCAPFVPKRKFKCSVCDKEFTQRHSLVYHESVHSDERHQCDVCGKVFLRLKSLETHSFMHTQANTHICTSCGKGFANNARLVQHMMRHNGKRKHKCEQCPMAFITNVELKLHTRIHTGEEPFKCAVCGKGFKSSSYRTQHMRNHTGEKPYECSVCDKRFYASSALTIHMRNHTGDRRYKCEICGKAFLEPSHLTEHVRMHTGERPFNCDICGKTFAYASGHRRHMLRHAGKRSFKCDECGKEFSSTSYLAIHVKLHNDERSFICDICGKGFTGTAHLTQHKRVHILERAHKCDFCDKAFVSPTDLGKHVRTHTGEPALRPYQCEVCFKSYASSWLVSQHMRSHTGERPFKCDMCGKEFLRNYHLKQHRRVHTDDRPFECDICKKGFFDNTELKFHRRSHTGEKPHRCELCDRAFTRPSELNVHKRVHANGPLHKCGACGKEFVQIKAYNRHQKIHKVDAIKDAERDEITLDESQDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -