Wsmi001767.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
-
Assembly
GCA_029784165.1
Location
CM056644.1:18733572-18740435[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.00032 0.035 16.2 0.6 1 23 101 123 101 123 0.98
2 29 0.046 5 9.5 1.0 1 23 129 151 129 151 0.95
3 29 0.00029 0.032 16.4 0.6 1 23 157 179 157 179 0.98
4 29 0.00022 0.024 16.7 0.9 1 23 185 207 185 207 0.97
5 29 9e-06 0.00099 21.1 3.5 1 21 213 233 213 234 0.95
6 29 0.028 3 10.1 2.7 1 23 257 279 257 279 0.97
7 29 0.085 9.3 8.6 1.8 1 23 285 307 285 307 0.93
8 29 5.9e-07 6.5e-05 24.9 1.5 1 23 313 335 313 335 0.98
9 29 1.1e-05 0.0012 20.9 4.2 1 23 341 363 341 363 0.98
10 29 3.5e-06 0.00038 22.4 0.3 1 23 369 391 369 391 0.99
11 29 0.00067 0.073 15.2 1.3 1 23 419 441 419 441 0.98
12 29 1.6 1.7e+02 4.7 0.3 1 9 458 466 458 478 0.76
13 29 0.0011 0.12 14.6 0.4 1 23 486 508 486 508 0.97
14 29 0.0054 0.59 12.4 3.0 2 21 515 534 514 536 0.93
15 29 0.017 1.9 10.8 0.5 1 23 542 565 542 565 0.94
16 29 4.2 4.6e+02 3.3 0.1 1 11 576 586 576 589 0.88
17 29 0.00021 0.022 16.9 1.3 1 23 658 680 658 680 0.97
18 29 0.00026 0.028 16.6 0.9 1 23 686 708 686 708 0.97
19 29 0.00096 0.1 14.8 1.2 1 23 714 736 714 736 0.99
20 29 0.00049 0.053 15.7 1.8 1 23 742 764 742 764 0.98
21 29 0.014 1.6 11.0 3.9 1 21 770 790 770 791 0.94
22 29 0.0056 0.61 12.4 0.9 1 23 815 837 815 837 0.97
23 29 0.085 9.2 8.6 1.4 1 23 843 865 843 865 0.93
24 29 1.4e-06 0.00015 23.7 0.4 1 23 871 893 871 893 0.98
25 29 8.8e-05 0.0096 18.0 5.9 1 23 899 921 899 921 0.98
26 29 7.8e-07 8.5e-05 24.5 0.8 1 23 927 949 927 949 0.99
27 29 0.24 26 7.2 1.5 1 23 977 999 977 999 0.84
28 29 0.00025 0.028 16.6 0.1 1 23 1016 1038 1016 1038 0.99
29 29 3.4e-05 0.0037 19.3 1.0 1 23 1044 1066 1044 1066 0.97

Sequence Information

Coding Sequence
ATGGAGCAATTTAGTGTAACAAAGGTGGAAAAAGCCACTTCAATAAAGGTAGAAGAACTTATAATATCCGACGTTGTGGCTACGAGGGAGGAAACTCCGCTCGCAAGCAATGATCAGTGGTCCGATGAACAAACTGTTACGAACGCCCTGAGCAAAGGAGCTACTGATGTGAAACAAGTACCAGAGATTGACATCACCGATAAAGCTGAGACAGGGGCAGCTTGTGATAAAATTGCAGTTGCTACCTCCAGCAACTTAAACGGATCGGAAAATGGTGTTGGTGATCATCCACCGAAAAAATACGTTTGTGAATTCTGCAGCAAGGAATTAAGCACAAAGTATAGCTTGGCGGATCATAGAAGAATTCACACCGGAGAACGACCTTTTGCATGTGATATCTGCAGCGAGACATTCAGCTCAGTACGAAGTTTGCGGTTCCATAAGAGTACTCATAAGAGGGACCTAAAGTTCGAGTGTGACATATGTGAGCAACGATTCCAACTTAAATCACGTCTTGCGTGGCACATGAAGACACACCGCTCAGATTGCCCTCATAAGTGCTTAATTTGCGATGAAAGATTTCAATATTCCGATAATCTCGCAGACCATATGGTTCGTCACAGTAAAGAGCGACCCTTCAAATGCGATATCTGTGACAAATCATACAAAAGGTCTAGATCCTTAAAGCGTCATATCTGCAGATTAAACGATCCCCTCCCAAGCAAGCCGAAAAAGCGCAAAACTGATGTTGATCAACTACCAAAAAAGCACGTTTGCGAATTCTGCAACAAGGAACTGGGCACAAAATACCGGTTGGAAGATCATAGAAGAAAGCATACCGGGGAACGACCTTTTGCGTGTGATATCTGCAGCAGAACATTCCACACAGCAATGCGCTTGCAGTACCATAAGAGTGCTCATGCAGACGACCGGAAATTCGAGTGTGACATATGCAAGCGATGTTTCTCCGTGAAATCAAATTTAGCGGTCCACATGAAGGTACACCGCCCAGATTGCCCACATAAATGTCTGGTTTGTGATAAATTATTCGCAACTAGTTACCATCTCGAACAACATATGCGCACTCACACCAATGAACGATCCTTCAAATGCGAAATTTGTGACGCTTCATACAAGAGACCTAATGGTCTAGTACGTCATATGAAGAGCCACAATGTCGACCCCTCTCCAGGCAGCACAGAAGGTTTAGAGCCAAACCAGACCGGTAACAGCCAGAACAATGGATCTGCGAAATACAACTGCGACATATGCGGTAAACAGTACAACCGGTTGAGACCGTTTAACTCACATCTGAAACGTCATCAGAGCACCACTGTGAGACCTGATAGTAAAACCCAACACAAAAAGCTGTACGAGTGTGAAATTTGTGGAAAAAGAAATCCGAATAGAGCACTGCACGTAAGGCACATGCACTGTCACACTTCAGATCGGCCTTTTAATTGCGATATTTGCGGTTCAACATCAAAGTCAGCCGGTGATTTAAAACGCCATAAGGAAAGGCACAGCTCCGAGAGACCGTGTAAATGCGAAATTTGCGGGAAAGGTTTTTTATATCCTAGTGAGCTAAGACAGCACATGCTTTGCCACACTAATGAACGGCCTTTCAAATGCACTGATTGCAGCCTATCATTTGAGTCAGAATATAAAGTGAGCAATCATGTTTTGAATGTTCACAAGCAGGAGCAAGACCACTCGGAGCGTTCGTACGAATGCTCGCTTTGCGATAAACGCGTAACGAAGGTGGCAGAAGCCCCTGTAATAAAGGTAGAAGAACTCATAATATCCGACGTTGTGACTACGAAAGAAGAGACTCCGTTCGCTAGCAGGATGGACATCACCGATAAAGTTGAGACTAGCACAGCTTGTGATGAAATTGCAGTTGCCAGCTCCAGCAACTCAAACGGTTCTGAAATGCATAATTCCGGTGTTAGTGATCATCCGGAGAAAAGGCACATTTGTGAATTCTGCAACAAGGAATTAAGCACAAACTATAACTTGGTGGCCCATAGAAGAATTCATACTGGGGAACGACCTTATGTGTGTGATATCTGCAGCGAAACATTCAAAACAGTTCAAAATCTGCGATACCATGAAAAAAATCATGCAAGCGGGCGTAACTTCAAGTGTGACATATGTGAGCAACGGTTTCCGCTAAAATCACGTCTTGCGTCACACAAGAAAACGCATAGCTCAGATTACCCTCATAAGTGCTTAATTTGTGATCAAAGATATCCATATAGTTGGCGTCTTACAGAACATATGCGCACTCACAGCAATGAGCGACCCTACAAATGTGACATCTGTAACAAATCGTACAAGAGGTATAAAGCTAAGAAGCTTCATATCTGCAAATTATATGATCCAAGTTGCAGTAAGCCGAAAAAACGCAAAACTGGTATTGTTGATCAACCACCGAAAAAGCACATTTGTGAAATATGCAACAAAGAACTGGGCACAAAATACAGGTTGGAAGATCATAGAAGAATACATACCGGGGAACGACCTTTTGCCTGTGATATCTGCAGCAGAACATTTCACACAGCAATACGTTTGCAGTACCATAAGAGTGCTCACACAGAAGACCAGAATTTCGAGTGCGACATATGCAAGCGGCGTTTCTCCGTAAAAGGAAATTTAACGATCCACATGAATATACATCGCACAGATTGTTTTCACAAATGTTTGATTTGCGATAAAAAATTTCCCTCTAGTTGTCATCTCGAACAACATATGCGTGCTCACAGCAGCGAACGAGTTTTCAAATGCGAAATCTGTGACGCTTCATACAAGAGATCTACTAGTCTAGAACGTCATATGAAGATCCACAAGGTCGATCCCACCCCAAGCACCACAGAAGGTTTGGAGCCAAACCAGGTCGATAGCAACCGGAGCAATGGATCCGCAAAATACACGTGCGACATATGCGGAAAACAGTACAAAGGTTTGAGACCGTTGCACTTTCATCTGAAGCTTCATCAGACCACCACTGTGGGATCTGATGATAAAAACCAACACAAAAAGCAGTATGAGTGTACAATTTGTGGAAAAGGAAATCCGTCTAAGGCAATGCTCATAAGGCATATGCAACGTCACAGTAACGTACGGCCTTTTAATTGTGATATTTGCGGTTCATCGTTTAAATCAGCTGATTATTTAAGACGCCATAAGGAAAAGCACATCTTTGAGAGAAAAACACAAGAGGCGATACTATTCCAGACTGATTCGTTAGTTGCAAATTCTTAG
Protein Sequence
MEQFSVTKVEKATSIKVEELIISDVVATREETPLASNDQWSDEQTVTNALSKGATDVKQVPEIDITDKAETGAACDKIAVATSSNLNGSENGVGDHPPKKYVCEFCSKELSTKYSLADHRRIHTGERPFACDICSETFSSVRSLRFHKSTHKRDLKFECDICEQRFQLKSRLAWHMKTHRSDCPHKCLICDERFQYSDNLADHMVRHSKERPFKCDICDKSYKRSRSLKRHICRLNDPLPSKPKKRKTDVDQLPKKHVCEFCNKELGTKYRLEDHRRKHTGERPFACDICSRTFHTAMRLQYHKSAHADDRKFECDICKRCFSVKSNLAVHMKVHRPDCPHKCLVCDKLFATSYHLEQHMRTHTNERSFKCEICDASYKRPNGLVRHMKSHNVDPSPGSTEGLEPNQTGNSQNNGSAKYNCDICGKQYNRLRPFNSHLKRHQSTTVRPDSKTQHKKLYECEICGKRNPNRALHVRHMHCHTSDRPFNCDICGSTSKSAGDLKRHKERHSSERPCKCEICGKGFLYPSELRQHMLCHTNERPFKCTDCSLSFESEYKVSNHVLNVHKQEQDHSERSYECSLCDKRVTKVAEAPVIKVEELIISDVVTTKEETPFASRMDITDKVETSTACDEIAVASSSNSNGSEMHNSGVSDHPEKRHICEFCNKELSTNYNLVAHRRIHTGERPYVCDICSETFKTVQNLRYHEKNHASGRNFKCDICEQRFPLKSRLASHKKTHSSDYPHKCLICDQRYPYSWRLTEHMRTHSNERPYKCDICNKSYKRYKAKKLHICKLYDPSCSKPKKRKTGIVDQPPKKHICEICNKELGTKYRLEDHRRIHTGERPFACDICSRTFHTAIRLQYHKSAHTEDQNFECDICKRRFSVKGNLTIHMNIHRTDCFHKCLICDKKFPSSCHLEQHMRAHSSERVFKCEICDASYKRSTSLERHMKIHKVDPTPSTTEGLEPNQVDSNRSNGSAKYTCDICGKQYKGLRPLHFHLKLHQTTTVGSDDKNQHKKQYECTICGKGNPSKAMLIRHMQRHSNVRPFNCDICGSSFKSADYLRRHKEKHIFERKTQEAILFQTDSLVANS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-