Wsmi001766.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
-
Assembly
GCA_029784165.1
Location
CM056644.1:18719629-18728313[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 7.3e-05 0.008 18.3 1.2 1 23 79 101 79 101 0.99
2 32 0.034 3.7 9.9 0.7 3 23 109 129 107 129 0.97
3 32 0.00047 0.051 15.7 4.2 1 23 135 157 135 157 0.99
4 32 0.096 10 8.5 4.6 1 23 163 185 163 185 0.98
5 32 6.1e-05 0.0067 18.5 2.4 1 21 191 211 191 212 0.96
6 32 0.00051 0.055 15.6 1.0 1 23 239 261 239 261 0.99
7 32 0.0019 0.21 13.8 1.8 1 23 267 289 267 289 0.95
8 32 1.3e-05 0.0014 20.6 0.5 1 23 303 325 303 325 0.98
9 32 1.5e-06 0.00016 23.6 1.2 1 23 331 353 331 353 0.99
10 32 0.002 0.22 13.8 0.5 1 23 381 403 381 403 0.98
11 32 0.054 5.9 9.3 1.4 1 20 420 439 420 442 0.95
12 32 7.2e-05 0.0079 18.3 1.0 1 23 448 470 448 470 0.98
13 32 0.14 15 8.0 4.3 2 21 477 496 476 498 0.92
14 32 0.0001 0.011 17.8 1.9 1 23 504 527 504 527 0.95
15 32 0.00035 0.038 16.1 2.5 1 20 536 555 536 556 0.97
16 32 0.00036 0.039 16.1 0.6 1 23 648 670 648 670 0.98
17 32 0.058 6.4 9.1 0.9 1 23 676 698 676 698 0.95
18 32 0.00032 0.035 16.2 0.6 1 23 704 726 704 726 0.98
19 32 0.00025 0.027 16.6 0.9 1 23 732 754 732 754 0.97
20 32 9e-06 0.00098 21.1 2.7 1 21 760 780 760 781 0.95
21 32 0.18 20 7.6 2.7 1 23 804 826 804 826 0.97
22 32 0.094 10 8.5 1.8 1 23 832 854 832 854 0.93
23 32 2.3e-05 0.0025 19.9 1.1 1 23 860 882 860 882 0.98
24 32 1.9e-05 0.0021 20.1 6.1 1 23 888 910 888 910 0.98
25 32 3.8e-06 0.00041 22.3 0.3 1 23 916 938 916 938 0.99
26 32 0.00028 0.031 16.4 0.7 1 23 966 988 966 988 0.98
27 32 4.5 4.9e+02 3.2 1.1 1 9 1005 1013 1005 1027 0.75
28 32 0.0012 0.13 14.5 0.4 1 23 1033 1055 1033 1055 0.97
29 32 0.006 0.65 12.3 3.0 2 21 1062 1081 1061 1083 0.93
30 32 0.019 2.1 10.7 0.5 1 23 1089 1112 1089 1112 0.94
31 32 0.21 23 7.4 4.2 1 20 1123 1142 1123 1145 0.95
32 32 0.0022 0.24 13.6 1.5 1 23 1151 1175 1151 1175 0.94

Sequence Information

Coding Sequence
ATGATGGGAGAATTCACTCCAACAACGAAGGTAGAAGAACTTACAATACCCGGGGCTCTAGCTACGGAACAGAAAATCTCGCTCGCCAGTAGCGATAGATGCTCCGGCACACCGACTGTTACAAACGCCTTGAGGGAAGATTCAGCTGATGTAAAACAAGAACCTTTGACGGACATCACCGATGAAGTTCAAACTAAGCCAGCTTGTGACATCGGTGATCATCCACCGAAAAAGTACGTTTGTGAATTTTGCAACAAGGAATTAACCACAAAATATAGCTTGGCGGATCATAGAAGAACACACACCGGGGAACGACCTTTTGGGTGTGATATCTGCAGTGAAACATTTAGAACAGTTCAACGTCTGCAATATCATAAGCGTGCTCACACTAAGGACCAAGAGTTCAAGTGTGTCATATGCAAGGAACGGTTTTCGCTGAAATCACATCTTGTGTCACACAGGAAAAAGCATAGCTCAGATTACCCTCATAAGTGCTCAATTTGTGATCAAAGATATTCATGTAAGTGGCGTCTCACAGAACATATGCGCGCTCACAGCGATGAGCGACCCTTCAAATGCGACATCTGTAACAAATCGTACAAGAGAACTAGAGCTTTAAAGCGTCATATCTGCGAAATAAACGATCCCTCCTCAAACAACtcagatggttcaaaaatgcGCCAAACCGGTGTCGATGATCAACCACCAAAAAAGTATGTTTGTGAGTTCTGCAATAAGGAACTGACCACAAAATACGGCTTGGACGATCATAGAAGAACGCATACCGGGGAGCGACCTTTTACGTGTGATATCTGCAGCAGAACATTTCGCACATCAGTACGTTTGCGGTACCACAAGAGTGCTCATACAGAAGATCGGAACTTCGAATGTGAAATATATTGCCCTCATAAATGTCTGATCTGCGATAAAACATACGCTAGTAATTCTGGTCTCGTAGAACATATGCGCGCTCACAGCGATGCGCGACCCTTCAAATGCGACATTTGTGACGCAACGTATAAGAGACGTACTAATCTGAAAGACCATATGAAGATCCATAAGGTTGATCTCCCTTCAGGCAACACAGACGGGTTGGAACCAAACCAGACTGATATAAGCCAAAACAATGAATCCGAGAAATACACCTGCGACATATGCGGTGAACAGTACAAACAAATTAGACGACTTCAACTACATCTGAAATTGCATCAAAGCACTACTGTGACTGCTAATATCAAAACTCACAACGCGCAGCGGTACGAGTGTGAGATTTGTGGAAAAGGAAATCCGGATAGAACATCGCTCAGAGTTCATATGCATTGTCACACTGAAGAACGGCCTTACAGCTGCGACATTTGTGGTTCATCATTCAAGTCAACTAAAGATTTGAAAGTCCATAAGAAAATACACCTCCCAGAGAAACCCTGCGAATGCGAAATTTGCGGAAAAAGATTTCTTTTTCCTACTAAGCTAAGGCAGCACATGCTTTGCCACACTGATGAACGGGCTTTCAAATGCACCAACTGCAGCCTATCATTCAAGTCAAAATATAACCTGAGCAATCATGTTTTGAATATCCACAAGCAAAACCAGTCGGAGCGTTCGTACGAGTGCTCGTTTTGCCATAAACGATTTACATCAAAACAAAGCCTGCGGGAACATCAGGTGGAAAAAGCCACTGCAATAAAGGTAGAAGAACTTATAATATCCGACGTTGTGGCTACGAGGGAGGAAACTCCGCTCGCCAGCAATGATCAGTGGTCCGATGAACAAACTGTTACGAACGCCCTGAGCAGAGGAGCTACTGATGTGAAACAAGAACTAGAGATGGACATCACCAATAGAGCTGAGACAGGGGCAGCTTGTGATAAAATTGCAGTTGCTACCTCCAGCAACTCAAACGGATCGGAAAAGCGTGTTGGTGATCGTCCACCGAAAAAATACGTTTGTGAATTCTGCAGCAAGGAATTAAGCACAAAGTATAGCTTGGCGGATCATAGAAGAATTCACACCGGGGAACGACCTTTTGCATGTGATATATGCAGCGAAACATTCAGCTCAGTACAAAGTTTGCGGTTCCATAAGAGTACTCATAAGAGGGACCTCAAGTTTGAGTGTGACATATGTGAGCAACGATTCCAACTCAAATCACGTCTTGCGTGGCACATGAAGACACACCGCTCAGATTGCCCTCATAAGTGCTTAATTTGCGATGAAAGATTTCAATATTCCGATAATCTCGCAGACCATATGGTTCGTCACAGTAAAGAGCGACCCTTCAAATGCGATATCTGTGACAAATCATACAAAAGATCTAGAGCCTTAAAGCGTCATATCTGCAGATTAAATGATCCCCTCCCAAGCAAGCCGAAAAAGCGCAAAACTGATGTTGATCAACCACCGAAAAAGCACGTTTGCGAATTCTGCAACAAGGAACTAGGCACAAAATACCGGTTGGATGATCATAGAAGAAAGCATACCGGGGAACGACCTTTTGCGTGTGATATCTGCAGCAGAACATTCCACACAGCAATGCGCTTGCAGTACCATAAGAGTGCTCATGCAGACGACCGGAAATTCGAGTGTGACATATGCATGCGATGTTTCTCCGTGAAATCAAATTTAGCGGTCCACATGAAGGTACACCGCCCAGATTGCCCACATAAATGTCTGATTTGTGATAAAATATTCGCAACTAGTTGCCATCTCGAACAACATATGCGCACTCACACCAATGAACGATCCTTCAAATGCGAAATTTGTGACGCTTCATACAAGAGACCTAATGGTCTAGTACGTCATATGaagagccacaatgtcgatccCTTTCCAGGCAACACAGAAGGTTTAGAGCCAAACCAGACCGATAACAGCCAGAACAATGGATCTGCGAAATACAACTGCGACATATGCGGTAAACAGTACAACCGGTTGAGACCACTTAACTTACATCTGAAACGTCATCAGAGCACCACTGTGAGACCTGATAGTAAAACCCAACACAAAAAGCTGTACGAGTGTGAAATTTGTGGAAAAGGAAATCCGAATAGAGCACTGCACGTAAGGCACATGAACTGTCACACTTCGGATCGGCCTTTTAATTGCGATATTTGCGGTTCAACATCAAAGTCAGCCGGTGATTTGAAACGCCATAAGGAAAGGCACAGCTCCGAGAGACCGTGTAAATGCGAAATTTGCGGGAAAGGTTTTTTATATCCTAGTGAGCTAAGACAGCACATGCTTTGCCACACCAATAAACGGCCTTTCAAATGCACTGATTGCAGCCTATCATTTGAGTCAGAATATAAAGTGAGCAATCATGTTTTGAATGTTCACAAGCAGGAGCAAGACCATTCGGAGCGTTCGTACGAGTGCTCGCTTTGCGATAAACGGTTTGCATGCAGACAAAATCTTTGGTCACATCAGGCTTGTCACACTGAAGAACGACCATACAAATGCGATATTTGCTTGTTATCATACAAAACATATCGTGCGTTACGGGATCACAGAAGAACGGAAAAGCACATTAAGCAAATATTAATTGCGAACGAAAACTAA
Protein Sequence
MMGEFTPTTKVEELTIPGALATEQKISLASSDRCSGTPTVTNALREDSADVKQEPLTDITDEVQTKPACDIGDHPPKKYVCEFCNKELTTKYSLADHRRTHTGERPFGCDICSETFRTVQRLQYHKRAHTKDQEFKCVICKERFSLKSHLVSHRKKHSSDYPHKCSICDQRYSCKWRLTEHMRAHSDERPFKCDICNKSYKRTRALKRHICEINDPSSNNSDGSKMRQTGVDDQPPKKYVCEFCNKELTTKYGLDDHRRTHTGERPFTCDICSRTFRTSVRLRYHKSAHTEDRNFECEIYCPHKCLICDKTYASNSGLVEHMRAHSDARPFKCDICDATYKRRTNLKDHMKIHKVDLPSGNTDGLEPNQTDISQNNESEKYTCDICGEQYKQIRRLQLHLKLHQSTTVTANIKTHNAQRYECEICGKGNPDRTSLRVHMHCHTEERPYSCDICGSSFKSTKDLKVHKKIHLPEKPCECEICGKRFLFPTKLRQHMLCHTDERAFKCTNCSLSFKSKYNLSNHVLNIHKQNQSERSYECSFCHKRFTSKQSLREHQVEKATAIKVEELIISDVVATREETPLASNDQWSDEQTVTNALSRGATDVKQELEMDITNRAETGAACDKIAVATSSNSNGSEKRVGDRPPKKYVCEFCSKELSTKYSLADHRRIHTGERPFACDICSETFSSVQSLRFHKSTHKRDLKFECDICEQRFQLKSRLAWHMKTHRSDCPHKCLICDERFQYSDNLADHMVRHSKERPFKCDICDKSYKRSRALKRHICRLNDPLPSKPKKRKTDVDQPPKKHVCEFCNKELGTKYRLDDHRRKHTGERPFACDICSRTFHTAMRLQYHKSAHADDRKFECDICMRCFSVKSNLAVHMKVHRPDCPHKCLICDKIFATSCHLEQHMRTHTNERSFKCEICDASYKRPNGLVRHMKSHNVDPFPGNTEGLEPNQTDNSQNNGSAKYNCDICGKQYNRLRPLNLHLKRHQSTTVRPDSKTQHKKLYECEICGKGNPNRALHVRHMNCHTSDRPFNCDICGSTSKSAGDLKRHKERHSSERPCKCEICGKGFLYPSELRQHMLCHTNKRPFKCTDCSLSFESEYKVSNHVLNVHKQEQDHSERSYECSLCDKRFACRQNLWSHQACHTEERPYKCDICLLSYKTYRALRDHRRTEKHIKQILIANEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-