Wsmi002492.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:27711112-27714850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0039 0.42 12.8 4.0 2 23 31 52 30 53 0.95 2 32 8.5e-05 0.0093 18.1 1.2 1 22 59 80 59 80 0.97 3 32 0.00074 0.081 15.1 0.8 1 23 87 109 87 109 0.97 4 32 0.16 17 7.8 4.7 1 23 117 139 117 139 0.98 5 32 0.89 97 5.4 0.5 1 23 158 180 158 180 0.91 6 32 0.001 0.11 14.7 0.9 2 23 188 210 187 210 0.93 7 32 0.00084 0.092 14.9 1.2 2 23 217 238 216 238 0.97 8 32 3.1e-07 3.4e-05 25.7 1.2 1 23 244 266 244 266 0.99 9 32 0.00036 0.04 16.1 0.5 1 23 272 294 272 294 0.98 10 32 0.0008 0.088 15.0 1.7 1 23 362 384 362 384 0.97 11 32 0.0019 0.2 13.8 1.3 1 23 390 413 390 413 0.94 12 32 6.9e-05 0.0075 18.4 0.7 3 23 421 441 419 441 0.98 13 32 4.8e-05 0.0053 18.8 2.9 1 23 447 469 447 469 0.97 14 32 4.6e-06 0.0005 22.1 0.3 2 23 476 497 475 497 0.97 15 32 6.3e-05 0.0069 18.5 1.6 1 23 505 528 505 528 0.98 16 32 0.00025 0.028 16.6 0.6 1 23 541 563 541 563 0.98 17 32 0.005 0.54 12.5 1.0 2 23 571 593 570 593 0.90 18 32 0.0046 0.5 12.6 1.0 1 23 599 621 599 621 0.98 19 32 6.9e-06 0.00075 21.5 4.4 1 23 627 649 627 649 0.98 20 32 8.3e-05 0.009 18.1 0.8 1 23 655 677 655 677 0.99 21 32 0.0015 0.16 14.1 1.9 1 23 685 707 685 707 0.98 22 32 0.063 6.9 9.0 2.7 1 20 794 813 794 817 0.85 23 32 0.00075 0.082 15.1 3.3 1 23 823 845 823 845 0.96 24 32 0.0017 0.18 14.0 0.5 1 23 852 874 852 874 0.97 25 32 0.00029 0.032 16.4 0.5 1 23 880 902 880 902 0.95 26 32 0.03 3.3 10.1 3.2 1 23 910 932 910 932 0.98 27 32 2.1 2.3e+02 4.3 0.3 1 13 951 963 951 973 0.81 28 32 0.24 27 7.2 0.5 2 21 980 999 979 1002 0.81 29 32 4.6e-05 0.005 18.9 3.0 1 23 1008 1030 1008 1030 0.99 30 32 5.3e-05 0.0058 18.7 1.8 1 23 1036 1058 1036 1058 0.98 31 32 3.9e-05 0.0042 19.1 1.2 1 23 1064 1086 1064 1086 0.98 32 32 0.16 17 7.8 8.4 1 23 1094 1117 1094 1117 0.98
Sequence Information
- Coding Sequence
- ATGGACGCTTCAAATTCACAATCTATCAAGCTGATTCTCTTCTGTTCCAGTGACACAGGCTTTCTCGGCGCGGATCGTACCGGAGGCGATAAATGCAAGTTTTGTGGTAAAAACTTTCACGTAGAAGGACAACTAACGCAGCACCTAAAAGAACATCACACTGCAGATCGCCCGTACAAGTGTCCGACCTGTGAAAAAGGGTTCAAAATGAGACGAAAACTTGAAACGCATATGCGTAAAGGCTGCAATGAGCGACGGTTCGAATGCGACATCTGCGGTTCATCCTACAGGTCACATAGTGGTCTAAGTATTCACCGAAATCTCCACACGTATGTAGATCCGAAACCTTTCAAGTGTGACATGTGCAGTTCACAGTTCACTCGGAAAACTAGTctcaattttcacaaaaaaactcACTGGATGATCATGCACGAAGTGCGTACAGATGACAACGCGCCGCCTGAGCCATCATTTAAATGTGATATTTGTAATCTGGCCTACGACTCGCTCGATATACTTAACTTCCACCGAAAAACTCATAAAGCTGGAAAACAATCGCTGGAATGTGACTTATGTGGTAAAACTTTTACACAAACCAGATCATTCGAATatcataaaattgtaaaacatacCTCGAAGAAGAATCTCAAGTGTACAGTCTGTGGCAAAGATTACCATTTACGGGAGCAACTTGTGGCCCACCAGAAAACACACAACCCAGATCGCTCGTATAAATGTCCTATCTGTGGAAGAGGGTTTGCTCACCGTTTTGCACTCAATAGGCACCTGAGAAGCCACGAAGAGGAGCGGCCGTTTAAATGCGATACCTGCGATGCCTCATACAAGACAGTCTACGCATTACGCGCTCACTCGAATACCCACACGTCTGCCAATCCGAAACCTTTCCAGTGTGACTTGTGCAGTTGTCAGTATGACCTAAAGCGCAACCTCGCGTTTCATAAGAAGATAAGACATTTGAAAACTACTCCCACAATCTATCAGCTGCTTCTCCTCTTCTGTTCCAGTGACACGGGCGCTCTGGAAACGGATCGTACTGGAAACGGCGGCAATGACCAGCGGCAACACATCTGCGATATCTGCGGCAGAGGATACAGAAGGAAACGTTACATGGCGTTGCACAGGCAAACCCACACAAGCGAGCAGGTATTCGAGTGTAACATATGTGGGCAAACTTTTaacactgcaaaaaaaattagataccACAAAATGTTAAAACATACGGTGGAGCGAAACTTCGGCTGTGAAACATGCGGTAAAGATTTCATCCTGAAGGAACAATTAACGAAGCACCTGAAGACCCACAGCACGGATCGACCCCACAAGTGTTTAATTTGTGGGAGAGCCTTCCGAGTTAAATATAGTCTCGAGGAACATATGAATCATCATAGCAATGAGCGCCCGTTGGAGTGCGACATTTGTGGGCGTTCATACAAAACACAAAGTGGTTTAAACGAGCACAGAAAAATCCACACATCCGTCGATCCAAAGCCATATGAATGTGACCTGTGTGGTTCACGGTTCGTACAGAAGAGTAGCCTTAATTATCATAGGAAAACAAGGCACGAACCGCGTGATCAGGACGATGGCCAGCAGCCGCTGTTTAAATGTGACATCTGCGACTCCTCTTTCAAGTCTTCCGATGCGTTCGCcttgcataaaaaaattcaccCATCTATCAAGCGAAAAATTGAATGTGATTTGTGTGGTAAAGTCTTTAAGCAATCCAGGTCCCTTTATTTCCATAAAAAGATAAAACACACATCGGAAAAGAATTTCAAGTGTGAAATTTGTGGTAACGATTACCACCTTCAGGAGCAGTTGGAAAAGCACCTGAAGGGACACAGCACGGAACGGTCGCATAAATGTTCCTTCTGTGGGAAAGGTTTCAACTTTAGTTACGCGCTGAAGAAGCACATGCGCAGCCACAGCGAGGAGCGACCATTCAAATGCAGCGTCTGCGATGCATCCTACAAGACTGCCAATGGGCTACGGTTGCACCGGAAAACCCACACCTCCGACGATCCGAAACCGTTCAAATGTGACCTGTGCAGTTCTCAGTTTGTCCAGAAAAGCAGCCTCACAATTCACAGGAGTAAACATTTACAAACCAATCCCATTGCTGGTTGTTATGCTGATGATAAATCTTCAATAGAAAAGGTGCCTAGTCAGGATGAAACTAAAGAAACGAATAAATTAGAGACAAACTCAGGCAAAGAAGTTCTGACAATAAAATCTGAACATGAAGGGGAGAAAAATATTCTGTACAAATGCGATGTAAGCAGTGAAGTTGGTTCCTCCACGGGTACGCTCGAACAGCACCACCGAAGATCCCACAGTGATAAACGGAAGAGGCGGTCGTTTAGATGTGTTCTATGCGGCAAAACTTTCACCACAATCGGAAAACTTAAGTGCCACAAAGCTTTGAAACacatgctgaagaaaaaacacaAATGTGAACTTTGTGGTAAACATTTCTACTTGAAAGAACAACTAACACAGCACCTGGAAGCGCACAACAGAAACGATGGTCCGTACAACTGCTCGACTTGCGAAAAAAGTTTCCCAATCAAGTACAGGCTTGAAGAGCATATGCTCGAACACAAAAGTGAGCGGCCGTTCGAATGTGACATTTGCGGTTCATCCTACAGGACATCTACTGGACTGCAACGTCACAAAGATCTTCACACGAATGTCGATCCGCAACCCTTCAAATGTGACATGTGCAGTTCACAGTTCACTCAAAAGAGCAGCCTCAATTTCCATAGAAAAATACACCTGCTGAGCATGAATGAAGTGCGTACGGATAGCGACGCGCCGTCTGAGCCGTCGTTTAGATGCGACGTTTGTGATTTATCGTACAACTCACTCGAAATACTAAGCTTCCACAAGAAAATCCATAAGGCTAGGAAGCCGATTCAATGTAATTTATGTGGCCAAACTTTTAAGGCGACAAAATCACTCAAGTTCCATGAAATCATAAAACATACATCGGAGAAGAACTTCAAGTGTACAATCTGTGGTAAAGATTACCACCTTCGGGAGCAGCTGATCAAACACCAGAGAACACACGATAAGGAACGTTCGCATGAATGTTCCTTCTGTGGGAAAGGGTTCGTCTTCGGTTACGCCCTGAGAAAACACATGCGCAGCCACAGCGAGGAGCGGCCGTTCAAATGCAACTTTTGCGATGCAACATACAAGACAGCCTATAAATTGCGCGTTCATATGATATCTCACACGTCCGCGGATCCTCACCCTTTTAAATGTGACATGTGCAGCTGTCAGTATACCCAACAATGTAACCTTTTGTCCCATAAGAGGAAGAAACATCCGAAAATCAACAGCCTTTCGGGTGCTCATAGTGCTAAATAA
- Protein Sequence
- MDASNSQSIKLILFCSSDTGFLGADRTGGDKCKFCGKNFHVEGQLTQHLKEHHTADRPYKCPTCEKGFKMRRKLETHMRKGCNERRFECDICGSSYRSHSGLSIHRNLHTYVDPKPFKCDMCSSQFTRKTSLNFHKKTHWMIMHEVRTDDNAPPEPSFKCDICNLAYDSLDILNFHRKTHKAGKQSLECDLCGKTFTQTRSFEYHKIVKHTSKKNLKCTVCGKDYHLREQLVAHQKTHNPDRSYKCPICGRGFAHRFALNRHLRSHEEERPFKCDTCDASYKTVYALRAHSNTHTSANPKPFQCDLCSCQYDLKRNLAFHKKIRHLKTTPTIYQLLLLFCSSDTGALETDRTGNGGNDQRQHICDICGRGYRRKRYMALHRQTHTSEQVFECNICGQTFNTAKKIRYHKMLKHTVERNFGCETCGKDFILKEQLTKHLKTHSTDRPHKCLICGRAFRVKYSLEEHMNHHSNERPLECDICGRSYKTQSGLNEHRKIHTSVDPKPYECDLCGSRFVQKSSLNYHRKTRHEPRDQDDGQQPLFKCDICDSSFKSSDAFALHKKIHPSIKRKIECDLCGKVFKQSRSLYFHKKIKHTSEKNFKCEICGNDYHLQEQLEKHLKGHSTERSHKCSFCGKGFNFSYALKKHMRSHSEERPFKCSVCDASYKTANGLRLHRKTHTSDDPKPFKCDLCSSQFVQKSSLTIHRSKHLQTNPIAGCYADDKSSIEKVPSQDETKETNKLETNSGKEVLTIKSEHEGEKNILYKCDVSSEVGSSTGTLEQHHRRSHSDKRKRRSFRCVLCGKTFTTIGKLKCHKALKHMLKKKHKCELCGKHFYLKEQLTQHLEAHNRNDGPYNCSTCEKSFPIKYRLEEHMLEHKSERPFECDICGSSYRTSTGLQRHKDLHTNVDPQPFKCDMCSSQFTQKSSLNFHRKIHLLSMNEVRTDSDAPSEPSFRCDVCDLSYNSLEILSFHKKIHKARKPIQCNLCGQTFKATKSLKFHEIIKHTSEKNFKCTICGKDYHLREQLIKHQRTHDKERSHECSFCGKGFVFGYALRKHMRSHSEERPFKCNFCDATYKTAYKLRVHMISHTSADPHPFKCDMCSCQYTQQCNLLSHKRKKHPKINSLSGAHSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -