Wsmi054507.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- Sall1
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:257945089-257948727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0086 0.93 11.8 1.0 1 23 16 38 16 38 0.98 2 32 4.2 4.5e+02 3.3 0.7 2 23 82 100 81 100 0.87 3 32 1.8e-05 0.0019 20.2 0.6 2 23 106 127 105 127 0.97 4 32 9.4e-06 0.001 21.1 0.6 1 23 133 155 133 155 0.99 5 32 0.00049 0.053 15.7 4.7 2 21 161 180 160 182 0.94 6 32 0.016 1.7 10.9 0.2 1 19 187 205 187 208 0.95 7 32 0.00075 0.082 15.1 0.2 1 23 234 256 234 256 0.98 8 32 0.0032 0.35 13.1 2.5 1 23 260 282 260 282 0.96 9 32 0.0019 0.21 13.8 0.5 1 21 285 305 285 306 0.94 10 32 9.2e-06 0.001 21.1 0.4 2 23 347 368 347 368 0.97 11 32 1.2e-06 0.00013 23.9 1.1 1 23 374 396 374 396 0.98 12 32 7.5e-05 0.0082 18.2 0.9 2 23 402 423 401 423 0.97 13 32 0.00014 0.015 17.4 5.2 1 23 462 485 462 485 0.98 14 32 0.006 0.65 12.3 0.4 1 23 508 530 508 530 0.98 15 32 0.38 42 6.6 1.9 1 23 535 557 535 558 0.97 16 32 0.014 1.5 11.1 1.7 1 19 562 580 562 583 0.93 17 32 2.2e-05 0.0024 19.9 2.1 1 23 620 642 620 642 0.99 18 32 0.0043 0.47 12.7 0.2 1 23 648 670 648 670 0.99 19 32 1.7e-06 0.00019 23.4 0.4 2 23 674 695 673 695 0.96 20 32 6.4e-06 0.0007 21.6 1.3 2 23 756 777 756 777 0.98 21 32 0.0001 0.011 17.8 2.0 1 23 783 805 783 805 0.97 22 32 0.00015 0.016 17.3 3.7 1 23 810 832 810 832 0.98 23 32 0.00037 0.04 16.1 2.1 1 21 837 857 837 862 0.93 24 32 0.0054 0.59 12.4 0.1 2 19 867 884 867 887 0.95 25 32 3.5e-05 0.0038 19.3 0.5 2 23 950 971 949 972 0.95 26 32 6.1e-05 0.0067 18.5 4.6 3 21 982 1000 980 1002 0.93 27 32 8.6e-05 0.0094 18.0 2.0 1 23 1008 1030 1008 1030 0.98 28 32 0.00046 0.05 15.8 1.0 1 23 1035 1057 1035 1057 0.98 29 32 9.4 1e+03 2.2 0.2 2 13 1065 1076 1065 1078 0.87 30 32 0.0053 0.58 12.4 1.9 2 23 1089 1110 1089 1110 0.93 31 32 6.5e-06 0.00071 21.6 0.8 1 23 1116 1138 1116 1138 0.98 32 32 4.7e-05 0.0051 18.9 1.8 1 23 1143 1165 1143 1165 0.98
Sequence Information
- Coding Sequence
- ATGACCAATGCACCTGAAGACCAACCGGCAAGTGCCTCCAAAAAGTATCAATGCGACCAATGTGGCAAGGGGTACTCCAGTGTGACCGGTCGTTATCGTCATAAAAAAGTTCATTCTAAAGAACCGCTGCCAAACAAGTGTGATAGTTGCAGTAAAACCTTTCTAACCTCAGCTCTGCTTGATTGTCACAAAACAGTTCACGAAGCGGCAGTTAATAAGGCGAAAACTTTACCACACAGACAAAAATGCTCAATCTGCAACAGAGAAGTGCGATATCTAGAGCGTCATGTACAGACCCACGAGAGTAACAAGACTAAATGCGATATATGTGGCAAAGTTTTTCCATTCACAAGAAATTTAAAACTTCATATGTTATACCACACCGGTGAGCGTCCGTACAAGTGCGAAGTTTGTGGCAAAGGTTATGTGACATCGACGCTGCTCAAAAACCATTTCCGCGTGCACGTCAACGAACAAATCAAATGCCATATATGCAATGAAACATTCACCCTGTTGAGTAGTTTGAAACGGCACATGAAGTGTCATCAGGAGGGGAAATTCACATGTGCTAAATGTGGGGCCAGCTATAAACTTCAGCAAACCTTGCGAAAACATGCTGTTTCTTGTTGTGCTACCAGTCGAGCAAATGTAAATGATCCGTTGGAAGATTCTGCATTATTCATTGAGGACAAACGTGTTTATAAGTGTAATATATGTGGCAATGAACTTTCTTCGATAGGTACTCTTAGGAGACACCAAATGCTCCATGAGGGCAGTCACGATTGTGATCGCTGCTATAGATCATTTGCTACCGCAAAGTTACTCGAGTACCACCGTCGAAGtcatAATAAACATAAATGTAATGTGTGCGACCAAATATTCATGAGCAAGGTACAGCTGACTTGGCATGCTAAGAAAAACAACTGCAAGCCTAGCGGTCAGCTAGGCGTTACGGACATTACTGATAAGCAGCCAGCTGCAGAACTGGACAAGTTATGTAATAAAGATGTAGCGCGGATCCCTGACGAGGGAAGAAATGAATGCAATAAATGTGGCAAAATATTTCCTAGAGGGCGAAATCTAGAACTTCACATGCGTTCCCACACGGGAGAACGTCCATTCAAGTGTGACATTTGCGGGAAAGCTTTCGTAACCAATACGACCCTTAAAAACCATTCCCGTTCGCATACCAATGAGAAATTGAAATGCAAGGAATGCGATAAAACGTTTCTTTTTCCGAGCGACCTAAAACGCCATTTAATCAGCCACGGCTGGAGAGAAGCCGATGGTAATGTCACAATAGCATCAACAACAGGTCAACAAGTTACAGTTTCAGAAACGCCATGTTCTGATGAGCTAGCATTAACATATGCCAACAAAAAATACCAATGTAGTGTGTGTGATAAACGCTACTCTTCCAGATGCAATTACAATAACCATTATCGAAGAGTTCACATTCGGTGTGATGCAGATAGTATATTGAAAGCACTAAGAAATAAATGCGATCCGACTGAATATCACTACAAGTGTGATGAGtgtaatatattttttgccatATTAGTGCAGTTGAAATATCATTCCCGTGTGCACACAAAAAAACTCTTCAAATGTGGTAACTGTGATATGAGGTTTCTGAAACTCTCCAAAAAGAAGAGACACTTATTGATACATCAGAAAAAGCGGCACAGTTGTAACGCCTGCGGTAGGACATTCACGAACATTGCACAACTCACATGGCACTGCAGAAAGAACAATTGCGATGAGACCAATGATCAACTACATATTGAGATCAAATGTGAAGAACCAACAATAGAATTTCCTAATGAAACGGGACAACCTGCACCTTccgaaaaaaagttcaaatgtGACCAATGTGGTAAGGAGTATTCTTTCGCGAGCAGCCTCTACCaacatcgaaaaactcataatATCGAATCGGTTTACAAGTGTAGCATTTGCTACAAGACGGTCGCAAATGCAGCGTTACTGGACTTACACTTTCGAAGCCATACGGAACTATCGTGTGGTGTCTGTGGGAAAGAATTCAAAACCAAAGATGAATTAAAGCAACATATGACAGTCCATCCGGAGACGGCTTCCATCAGCAATCCAAAGTTGCacaaatatgttttaaaaaaaagtaccaAAAGGtattacggtattcggagcgaCGAGGGGAAACTACCAAAAGCTAAATGTTTAATCTGTAACAAAGAAGTGAATTTTCCAGAGCAGCACGCACGGGCTCACGAGAATGACTCAAACCGGTGCAAACAGTGTGGTAAGGTTTTTCCCTTCCAAAGGAACCTCAAACTTCACATGTTGTCTCACACCGGTGAACGACCGCACAAGTGTGAAATTTGCGGTAAAGCTTATGTCACATCAACGTTACTCAAATATCACTTCCGACTGCATACAAACGAACTGTTCAAGTGTGATAAATGTGAAAAAACATTCACCCTTTCTAACCTCTACAAACGCCACCTGAAAAGTCATCAGCAAGGAATGTACACATGCGATAAATGCGGCATTAGGTTTAAACGGAAACGACCTCTGCAAAAACATACCATTCGATGCCCCGGGCATCAGAAGAAACCTAAATGTAACGATTGCGGCCAGACATTCATGAATTTTGCACAACTTATGTGGCACGCGGGGAAAAACAACATGTGTAACATTAACGGTACGCCACACCTCGACTTGAAAACTTATGAGCAAACAACTGCAAGTGCTCGGGAAACCATCAAATCTGCAGTTAGCGATTCCAACTCTAATGGCAGCGTTGCTTCAGAAGATGAGAACAGACCCGCCGTGCTCGACTATCACCTAGTAAGCCATACAGCAAACAAATGCGGTGTATGTGGAAAGGACTTTGAAACACCCGGTGAATTAACACAACACATGACGCTTCATCATCCGAACACGGCTCTTATTAACAAGCATTGCAATCAATGCGGTAAGGTATTTTCTAGACAAAGTTATCTTAAAATCCACATGCTTTGTCACACCGGGGATCGTCCACACAAATGTGAAGTTTGCGGTCAGGCTTTTGTAACGAAAACGATGCTAAAATATCACTTTCGTGTACATACTAACGAGCAGTTTAAGTGTGCAAAATGCGACAAAACATTCATTCTTCCGACAGTTTATAAACGCCACCTAAAAATCCATGATCGGACGCCCCAAAACAACGTTTGTTATATATGCAACAAAAGCGTCAAGAACCCACAACGGCACGCACGGTTTCATGCGAATCAGCAAAGAACATGCGCACAGTGTGGAAAATCATTCGCTAACGCACAAAATTACCGACTGCATTGTCTCACTCACAAAAAGGAACGTCCGTACAAGTGCGAAATCTGTGGTCAATCTTTTGTAACAAATACATTACTGAAGGACCATTTTCGTTTGCACACCGGCGATCTCTTCGAATGCGGTCATTGTGACAAGAAATACAATGTCGCGAGAAACTTAAGACGTCATCTAGAGAGTCACGAAAAGCAAACATCCAAACTAAACAAGAAGCCAAATCCCAATTCAACGAACCAGCAATGA
- Protein Sequence
- MTNAPEDQPASASKKYQCDQCGKGYSSVTGRYRHKKVHSKEPLPNKCDSCSKTFLTSALLDCHKTVHEAAVNKAKTLPHRQKCSICNREVRYLERHVQTHESNKTKCDICGKVFPFTRNLKLHMLYHTGERPYKCEVCGKGYVTSTLLKNHFRVHVNEQIKCHICNETFTLLSSLKRHMKCHQEGKFTCAKCGASYKLQQTLRKHAVSCCATSRANVNDPLEDSALFIEDKRVYKCNICGNELSSIGTLRRHQMLHEGSHDCDRCYRSFATAKLLEYHRRSHNKHKCNVCDQIFMSKVQLTWHAKKNNCKPSGQLGVTDITDKQPAAELDKLCNKDVARIPDEGRNECNKCGKIFPRGRNLELHMRSHTGERPFKCDICGKAFVTNTTLKNHSRSHTNEKLKCKECDKTFLFPSDLKRHLISHGWREADGNVTIASTTGQQVTVSETPCSDELALTYANKKYQCSVCDKRYSSRCNYNNHYRRVHIRCDADSILKALRNKCDPTEYHYKCDECNIFFAILVQLKYHSRVHTKKLFKCGNCDMRFLKLSKKKRHLLIHQKKRHSCNACGRTFTNIAQLTWHCRKNNCDETNDQLHIEIKCEEPTIEFPNETGQPAPSEKKFKCDQCGKEYSFASSLYQHRKTHNIESVYKCSICYKTVANAALLDLHFRSHTELSCGVCGKEFKTKDELKQHMTVHPETASISNPKLHKYVLKKSTKRYYGIRSDEGKLPKAKCLICNKEVNFPEQHARAHENDSNRCKQCGKVFPFQRNLKLHMLSHTGERPHKCEICGKAYVTSTLLKYHFRLHTNELFKCDKCEKTFTLSNLYKRHLKSHQQGMYTCDKCGIRFKRKRPLQKHTIRCPGHQKKPKCNDCGQTFMNFAQLMWHAGKNNMCNINGTPHLDLKTYEQTTASARETIKSAVSDSNSNGSVASEDENRPAVLDYHLVSHTANKCGVCGKDFETPGELTQHMTLHHPNTALINKHCNQCGKVFSRQSYLKIHMLCHTGDRPHKCEVCGQAFVTKTMLKYHFRVHTNEQFKCAKCDKTFILPTVYKRHLKIHDRTPQNNVCYICNKSVKNPQRHARFHANQQRTCAQCGKSFANAQNYRLHCLTHKKERPYKCEICGQSFVTNTLLKDHFRLHTGDLFECGHCDKKYNVARNLRRHLESHEKQTSKLNKKPNPNSTNQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -