Wsmi002512.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:27814666-27826106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.0002 0.022 16.9 2.8 1 23 100 122 100 122 0.98 2 35 1.2e-05 0.0013 20.8 1.6 1 23 130 152 130 152 0.98 3 35 7.7e-05 0.0085 18.2 5.0 1 23 158 180 158 180 0.95 4 35 0.14 15 8.0 0.7 1 19 188 206 188 208 0.83 5 35 0.00016 0.017 17.2 1.5 1 23 216 238 216 238 0.98 6 35 5.1e-05 0.0055 18.8 1.6 1 23 246 268 246 268 0.98 7 35 0.0016 0.17 14.1 2.0 1 23 274 296 274 296 0.98 8 35 0.0022 0.24 13.6 1.1 1 23 301 325 301 325 0.91 9 35 0.0043 0.47 12.7 0.3 1 23 422 444 422 444 0.98 10 35 2.7e-06 0.0003 22.8 0.4 1 23 452 474 452 474 0.98 11 35 2.9e-05 0.0032 19.5 4.5 1 23 480 502 480 502 0.97 12 35 0.023 2.5 10.4 0.8 1 20 510 529 510 530 0.94 13 35 0.0002 0.022 16.9 1.4 1 23 538 560 538 560 0.98 14 35 0.00043 0.046 15.9 1.8 1 23 568 590 568 590 0.98 15 35 0.015 1.6 11.0 3.8 1 23 596 618 596 618 0.98 16 35 0.0046 0.5 12.6 2.1 1 23 623 646 623 647 0.96 17 35 0.00059 0.064 15.4 0.2 1 23 744 766 744 766 0.98 18 35 1.7e-05 0.0019 20.3 1.5 1 23 774 796 774 796 0.98 19 35 1.5e-05 0.0017 20.4 5.4 1 23 802 824 802 824 0.97 20 35 0.13 14 8.0 4.8 1 23 832 854 832 854 0.95 21 35 4.9e-05 0.0054 18.8 2.9 1 23 860 882 860 882 0.98 22 35 0.00017 0.018 17.2 1.8 1 23 890 912 890 912 0.98 23 35 0.0002 0.022 16.9 0.7 1 23 918 940 918 940 0.96 24 35 0.0004 0.044 16.0 1.2 1 23 945 967 945 967 0.98 25 35 0.00011 0.012 17.7 0.3 2 23 976 997 976 997 0.97 26 35 0.00017 0.018 17.1 2.1 2 23 1004 1025 1003 1025 0.96 27 35 0.0015 0.17 14.1 3.2 1 23 1033 1055 1033 1055 0.98 28 35 0.0073 0.79 12.0 1.7 1 23 1061 1083 1061 1083 0.98 29 35 0.0039 0.43 12.8 1.7 1 23 1088 1111 1088 1111 0.97 30 35 1e-05 0.0011 21.0 2.8 1 23 1120 1142 1120 1142 0.98 31 35 0.00055 0.06 15.5 5.7 2 23 1149 1170 1148 1170 0.96 32 35 8.9e-05 0.0098 18.0 4.4 1 23 1178 1200 1178 1200 0.97 33 35 1.7e-05 0.0018 20.3 2.3 1 23 1206 1228 1206 1228 0.98 34 35 0.0014 0.15 14.3 5.7 1 23 1236 1258 1236 1258 0.98 35 35 0.00069 0.076 15.2 1.6 1 23 1264 1286 1264 1286 0.96
Sequence Information
- Coding Sequence
- ATGGAAATGGCAAAATCTGTTTTAATGAAAATAGAGGAAGAATCCGGGACGATAAAAGTGGAAGAAACTACGACGACATTAGATACTGTTTCGGATGTCATGGAATCTGATCTCCCAATCACCACGAATGAAGAACGCTCCTTCAGTGAGGCATCGGTTCTGCTAGATGGGCTGAATGTAGTGGAAGCTGACCCTGCCATcgataaaaccggtaaaacggAAACGGCTGCAGCAGTGGATGATCAAAATGCCACTCCTAGCTCAagACATACGCGCCTCCACGATGACGAGGGACTGTACCGATGCGAGATCTGCGGCAAAGGATACAAATCAATGTATAATCTACATGAACACAAGAAGAATCACACATCCGGTGAGAATAAACCATACAAATGCGACTTTTGTGGAAAAAGATTCATTTATCGCTCTACCCTCCTGAGACATACGGAAGTTCACAGTGGGGAGCGACCGCACAATTGCGATATCTGCGGAAAAAGTTACAAATCAGCAAGTCATTTAAACCAGCACAAGAAGTTTCACACAGCCCATGAGAATGAACTGCACAGATGTGAAATCTGCGGAAAAGGTTTCGTGTTTCACCACATACTTGTGAATCATTTGGTCTGTCACAGCAACGAACGACGGTATAAATGCGACATCTGCGGCAAGGAATACAAATTCGCAACTACGCTCAATGAGCACAAGAAGTATCACACAGCCGGTGAGGATGAACTGCACAAATGCGACTTTTGCGGGAGAAGTTACGTATATCGCTCAGCACTAGTACGGCATTTGGACACTCACAGCGATGAGCTACGACACAAGTGCGACATCTGCGGCAAGCGACAAAAGTCAAGAAGAGCTCTCCTTCAGCACATGGAAACTCATAAAGGTAAACGACACATATGTGCCATCTGCGGCAAGAAGTACCAATCAGCAACTCAGCTAGCTTACCACATGAAGATGAAGCGTCACACACTTGGTGAGGATTCATCGCACAGATGCGAATCCGGGACGATAAAGGTGGAAGAGATTACGACGACTTTCGATACTGTCTTGGATGTCATAGAATCTGATCTCCCAATCACCACGCATGAAGAACGCTCCTTCAGTGAGGCATCGGCTCCGCTAGATGGGCTGAATGTAGTGGAAGCTGACCCTGCCATcgataaaaccggtaaaacggAAACGGTTACAGCAGTGGATGGTCAAATTGCCGCTCCTAACTCAAGACATACGCGCCTCCACGATGACGAGCGACTATACCGATGCGAAATCTGTGGCGAAGGATACAAATCAAGGGGTATTCTTAAGGAGCACACGAAGAATCACACATCCGGTGAGGATAAACCGTACAGATGCGAAATTTGTGGAAAAAGATTCATTTATCGTTCTGCCCTCTTGAGACATACGGAAATTCACAGCGGGAAGCGACCGCACAAATGCGATATCTGTGGAAAAAGTTACAAATCAGCAGCTCATTTGAATCAGCATAAGAAGTATCACACAACCCATGAGGATGAACTGCACAGATGCGAAATTTGCGGAAAAGGCTTCGTGTTTCACCACGTACTTGTGAATCATTTGGTCTGTCACAGCAACGAACGACGGTATAAATGCGACATCTGCGGCAAGGAATACAAATACGCAACTACGCTTAGTGAGCACAAGAAGTATCACACAGCCGGTGAGGATGAACTGCACAAATGCGACTTTTGCGAGAGAAGTTACGTATATCGCTCAGCACTGGTACGACATTTAGACACTCATAGCGATGAGCTACGACACAAGTGCGACATCTGTGGCAAGCGACATAAGTCAAGAAGAGCCCTCTATACGCACATGGAAGTTCATAAAGGTAAACGATACATATGTGCCATCTGCGGCAAGGAGTGCCAATCAGCAACTAAGCTAGCTTACCACATGAAGATGCAGCATCACACACTTGGTGAGGATTCATCGCTCAGATGCGAATCCGGGACGATAAAGGTGGAAGAAATTACGACAACATTAGATACTGTTTCAGATGTTATGGAATCTGATCTCCCAATAACCAAGAATGAAGAATGCTCTCTCAGTGAGGCACTGACTCCGCTAGATGAGCTGAATGTAGTGAAACCTGACCCTGCCATCGATAAAACCGGTAAAATGGAAACGTCTGCAGCAGTGGATGTTCAAAATGCCGCTCCTAGCTCAagACACACGCGCCTCCACGATGACGAGCGACTGTACCGATGCGACATCTGCGGCGAAGGATACAAATCAAGGGGTATTCTTAAGGAGCACATGAAGAATCACACATCCGGTGAGGATAAACTTTACAGATGCGACTTTTGTGGGAAAAGATTCATTTATCGCTCTACCCTCTTGAGACATACGGAAATTCACACTGGGGAGCGTCAGCACAAATGCGATATCTgcggaaaaagttataaatcaGCAAGCCATTTGAATCAGCACAAGAAGTATCACACAGCCCATGAGGATGAACTGCACAGATGCAAAATTTGCGGAAAAGGTTTCGTGTTTCACCACATACTTGtgaaacatttggtccgtcacGGCGACGAACGACGGTATAAATGCGACATCTGCGGCAAGGTGTACAAATACGCACATACGCTCAATGAGCACAAGAAGTATCACACAGCCGGTGAGGAAGAACTGCACAGATGTGACTTTTGCGGGAGAAGATACGTATATCGCTCAGCACTAGTACGGCATTTGGACACTCACAGCGATGAGCTACGACACAAGTGCGACATCTGCGGCAAGCAACTCAAGTCAAAAAGAGCTCTCTATGCGCATATGGAAGCTCATAGAGGTAAACGATACATATGTGCCATCTGCGGAAAGGAGTGCAAATCAGCAACTAATCTAGACAATCACAAAAAAAGTCACACACTTGGTAAAGATTCACTGAACAGATGCGGCATTTGTGACAAAACTTTCATTTATCGTTCTGTCCTCTTGAAACATATGTACATTCACACTGAAGAGCGACGAATCAGGTGCGACATCTGCGGCAAGGATTTCAAATCAGTAACTCATTTGAAAGTCCATAAAAAGTATCACACATTCCATGAGGATGACTTGCACAAGTGTTCTGTTTGCGGGAAAGGTTTCATGTTTCGCAACCGACTCCTAAAACATTTGAACACTCACAGTGAAGAGCGTAAGTACAAGTGCGACTTGTGCGGCAAGCAACATAAGTCAAAAAGATCTCTCTACGCGCACATAGAAGTTCATAACGGTAAACGATACATATGTGACATCTGCAACAAGGAGTGCCAATCAGCAACTAAGCTAGCTTACCACATGAAGATGAAGCATCTCACACTTGGTGAGGATTCATCGCACAGGTGCAACATTTGTGAGAAAATTTTCGTTTATCGTTCTCAGCTCTTGAGACATATGTACACTCACACTGACGAGCGACAGTGCACATGCGACATCTGCGGCAAGGGATTCAAAACAGTAACTCAtctgaaaaatcataaaaagtaTCACACAACTAAAGAGGATGAGCTGCACATGTGTTCCGTTTGCGGGAAAAGTTTCATACATCGCTACAGGCTCGTTAAACATTTGAACACTCACAGCGATGAACGTAAGTACAAGTGCGACATTTGCGACAAGGATTTCAAAACAGCAACTTATCTGAATAATCATAAAAAGTATCACACAACCCATGAGGATGAGCTGCACAAGTGTTCCGTTTGTGGGAAAggtttcgtacatcactaccgGCTCGTAACACATTTGAACACTCACAGCGATGAGCCTAAGTACAAATGCGACATTTGCGACAAGCAGTACAAGTCAAAAGTACGTCTCTACAAACACAGAGAAGCACACAATGGTCAGCAATCGTAA
- Protein Sequence
- MEMAKSVLMKIEEESGTIKVEETTTTLDTVSDVMESDLPITTNEERSFSEASVLLDGLNVVEADPAIDKTGKTETAAAVDDQNATPSSRHTRLHDDEGLYRCEICGKGYKSMYNLHEHKKNHTSGENKPYKCDFCGKRFIYRSTLLRHTEVHSGERPHNCDICGKSYKSASHLNQHKKFHTAHENELHRCEICGKGFVFHHILVNHLVCHSNERRYKCDICGKEYKFATTLNEHKKYHTAGEDELHKCDFCGRSYVYRSALVRHLDTHSDELRHKCDICGKRQKSRRALLQHMETHKGKRHICAICGKKYQSATQLAYHMKMKRHTLGEDSSHRCESGTIKVEEITTTFDTVLDVIESDLPITTHEERSFSEASAPLDGLNVVEADPAIDKTGKTETVTAVDGQIAAPNSRHTRLHDDERLYRCEICGEGYKSRGILKEHTKNHTSGEDKPYRCEICGKRFIYRSALLRHTEIHSGKRPHKCDICGKSYKSAAHLNQHKKYHTTHEDELHRCEICGKGFVFHHVLVNHLVCHSNERRYKCDICGKEYKYATTLSEHKKYHTAGEDELHKCDFCERSYVYRSALVRHLDTHSDELRHKCDICGKRHKSRRALYTHMEVHKGKRYICAICGKECQSATKLAYHMKMQHHTLGEDSSLRCESGTIKVEEITTTLDTVSDVMESDLPITKNEECSLSEALTPLDELNVVKPDPAIDKTGKMETSAAVDVQNAAPSSRHTRLHDDERLYRCDICGEGYKSRGILKEHMKNHTSGEDKLYRCDFCGKRFIYRSTLLRHTEIHTGERQHKCDICGKSYKSASHLNQHKKYHTAHEDELHRCKICGKGFVFHHILVKHLVRHGDERRYKCDICGKVYKYAHTLNEHKKYHTAGEEELHRCDFCGRRYVYRSALVRHLDTHSDELRHKCDICGKQLKSKRALYAHMEAHRGKRYICAICGKECKSATNLDNHKKSHTLGKDSLNRCGICDKTFIYRSVLLKHMYIHTEERRIRCDICGKDFKSVTHLKVHKKYHTFHEDDLHKCSVCGKGFMFRNRLLKHLNTHSEERKYKCDLCGKQHKSKRSLYAHIEVHNGKRYICDICNKECQSATKLAYHMKMKHLTLGEDSSHRCNICEKIFVYRSQLLRHMYTHTDERQCTCDICGKGFKTVTHLKNHKKYHTTKEDELHMCSVCGKSFIHRYRLVKHLNTHSDERKYKCDICDKDFKTATYLNNHKKYHTTHEDELHKCSVCGKGFVHHYRLVTHLNTHSDEPKYKCDICDKQYKSKVRLYKHREAHNGQQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -