Wsmi002506.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
ZIPIC
Assembly
GCA_029784165.1
Location
CM056644.1:27758677-27764400[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1e-05 0.0011 20.9 0.7 1 23 10 32 10 32 0.98
2 30 5.7e-05 0.0063 18.6 0.8 1 23 128 150 128 150 0.98
3 30 0.01 1.1 11.5 2.6 1 23 161 183 161 183 0.98
4 30 0.0026 0.28 13.4 0.8 1 23 189 211 189 211 0.97
5 30 0.00068 0.074 15.2 3.6 1 23 217 239 217 239 0.98
6 30 0.00087 0.095 14.9 2.6 1 23 253 275 253 276 0.95
7 30 1.5e-05 0.0017 20.4 1.2 2 23 284 305 283 305 0.97
8 30 0.0012 0.13 14.4 0.3 1 23 311 334 311 334 0.96
9 30 0.0047 0.52 12.6 1.3 1 23 340 362 340 362 0.98
10 30 6.8e-05 0.0074 18.4 5.5 1 23 368 390 368 390 0.96
11 30 0.0072 0.79 12.0 0.2 1 23 395 418 395 418 0.82
12 30 8.9e-05 0.0097 18.0 4.7 1 23 424 446 424 446 0.97
13 30 0.00014 0.015 17.4 0.1 1 23 452 474 452 474 0.98
14 30 0.00064 0.07 15.3 3.9 1 23 484 506 484 506 0.97
15 30 9.8e-06 0.0011 21.0 2.3 1 23 514 536 514 536 0.98
16 30 2.5e-07 2.7e-05 26.0 1.7 1 23 542 564 542 565 0.94
17 30 6.9e-05 0.0075 18.4 0.7 1 23 573 595 573 595 0.98
18 30 0.00012 0.013 17.6 0.3 1 23 612 634 612 634 0.98
19 30 0.00019 0.021 17.0 4.9 1 23 640 662 640 662 0.97
20 30 0.0001 0.011 17.8 0.1 1 23 668 690 668 690 0.98
21 30 0.002 0.21 13.8 3.3 1 21 700 720 700 724 0.90
22 30 2.3e-05 0.0025 19.9 1.9 1 23 730 752 730 752 0.97
23 30 8.6e-08 9.4e-06 27.5 1.2 1 23 758 781 758 781 0.97
24 30 7.5e-05 0.0082 18.2 0.6 1 23 789 811 789 811 0.98
25 30 8e-05 0.0087 18.2 0.4 1 23 828 850 828 850 0.99
26 30 0.00053 0.057 15.6 0.6 1 23 856 878 856 878 0.97
27 30 0.00028 0.031 16.4 0.1 1 23 884 906 884 906 0.98
28 30 8.6e-05 0.0094 18.1 2.2 1 23 916 938 916 938 0.97
29 30 0.002 0.22 13.8 1.2 3 23 948 968 946 968 0.98
30 30 2.1e-07 2.2e-05 26.3 0.7 1 23 974 996 974 996 0.99

Sequence Information

Coding Sequence
ATGCTAAGTCACAGTGATGAACGTCAGTTCCAGTGCGACATCTGTCCCTCAACATTCAAATCACAAGACGCACTGAATAAGCATAAAAAAGTCCATCTGCGTGGTTTAGAGATGAATCCCTTCGATGTGGCGCATGGTTCAAAAGATCCACACAGCCATGTGGATATTTTGGAATCGAATTACACGGAAGATGGAAAGCACACCGACGAGCTGCTGGTCAAGCGGAAAAATTGTAGCAAATCTTTCAGAACTATCGCCAAACAGGAAAGCCACAAACCGATTCACCCGCGTGAGCCATGTTTCAAATCTGAAATATGTAACCAATCTTTTGCACTGAGTGGAAAATTAAAGCCCATGCAATATCAGGACGTGAAGCAACTGTTCAAGTGCGACATATGTGGCAAATCATTCAACTCGTCCAGTATTTTATATGTTCATAAAAAAATCCACGGCTCAGTAAAACATACAGCGAAAGCGAATTTCCATTGTGAATTATGTGGTGAAGATTTTCTGTTCAAGTCTCATTTGGCGAATCACCTGAAAGTTCATAGCGCAGATGGTCCTCACAAGTGCTTGATTTGCGAAGAGAACTTTATATTTCGTAGCATGCTCGTAGAGCACATGGATAGCCACAGTGGCGAACATCGGTTTCAATGCGACATCTGTACCTCAACATACAAATATCAAAGCACACTCAATAAGCATAAACAAAAACACGTGGAGGTGACACCTCCGGATGTGGATTCGGAAGATCCACACAAGTGTGGTGTATGCAAAAAGGTTTTCATTGGCAGGGATACGTTGGAAGAACATAAGAAAATTCATCACAAAAAGAAATTATTGGATCTCAAGTGCCAAATTTGCGATAAACAAGTTAAAACAAGTTTCCTATTAAAAATACACATGCGTACACACACAGGCGAACGGCCTTTTGAATGTGAGACATGTGGTAAAACTTTTATAACAAGCGCCATCCTTGGCAAACATAGAATCACAAAGCATTCACTGGAGAAAAGATTTAAATGTGATGTATGTGCTAAAGATTTTCACTTGAAGGGACAATTGACGACACATTTGTCTGTGCACAGTACGGATCGTCCGCACCAGTGTACGGTCTGTGGGAAAGACTTCAAAACTAAATATTCGCTCCAAAAGCACGGGCACAGTCACAGCGATGACTCGTTTCAATGCGACATCTGTGGATTGTCATACAAAACACCCATCAGTTTGTTGAGCGTACATCTGAAGACTCATAGCACAGAACGTGCGCACGAGTGTCTGGTTTGTGGAACGCGCTTCAGGTATCGCTCTAAGCTAGCCCGGCACATGCACACTCACAGTGAAGCGCGATGTTTTACGTGCGACGTTTGTGGGGCGTCGTTCAAGCTACCACAAGGTCTAAGGGTTCATAGAAAAATTCACACCACCGTTTTAAAGGAGTCAAATATGCACAAGTGCACTATATGCAGGAGACGTTTTTCCACCGAGGAAACACTGAAGCAACATAAAGCATCTCATCCGCATACGGAACCGCCGCATTTCGTTTGCGAAACCTGTGGCTTAGTGTGTTCTACCAAGTCTAATCTCAAGTATCATCAGAAAATTCACACCGCCGAGCGACCGTTCGCATGTGAAACGTGTGGTAAAGCGTTCAGGAGAAGCTACAATCTTAACAGACATATAACCGTGCACCACGAGAAGCCATTGAAGAAAAACTTTCGGTGTGAGCTGTGTGGTGAAGGCTTCCGCTTGAGGACTCATTTGTGGCGCCATTTGGAGGTACATCGAGAGAAAAGCCCGCACGAAAACGGCCCGCATACAACGGAGAAAACATTTGAATGTAAAATATGTGGTGAAAATTTCCCCTTGTATACACAGTTGAGTGTACATCTGAAGACACATAGCACAGAACGAGCGCACGAGTGTCTTGTTTGTGGAACGCGCTTCAGATTTCGCTCTAAGCTAGCCCGGCACATGCACACTCACGGTGAAGCGCGATGTTTTGTGTGCGACGTTTGTGGGGCGTCGTTCAAGTTACCAGGAAGTTtaagtaaacataaaaaaattcacatcACCGTTTTGGAGGAATCTGCTACGCACAAGTGCACTATATGCAGGAGACGTTTTTCTACCGAGCACACCCTGAAGCAACATGAAGCATCTAATCCGCATACGGAACCGCAGCCTTTCGATTGCGAAATCTGCGGTTTAGTGTGTACTACCCAATATAATCTCGAGTATCATCGGAAAACTCACACCGGCGAGAAACCGTTCAAATGTGAAACGTGTGGTAAAGCATTCAGCAGGAGCTACGATCTTAATAGACATATGACCGTACGCCACGAGAAGCGGCTGGAGAAGAATTTTCGATGTGAGCTGTGTGGTAAAGCCTTTCGTttgagaatttatttgttgcgcCATCTGCAGTTACATCAGGAGGAACGTCCGCACAAGAACGGCCCGCATACAACggagaaaaaatttaaatgtgaAATATGTGGTAAAAATTTCCCCTTGTATACACAGTTAGGTGTACATCTGAAGACACATAGCACAGAACGTGCGCACGAGTGTCTGGTTTGTGGAATGCGCTTTAGGTGGCCCTCTAAGCTAGAACAGCACATGCTCACTCATAGTGAAGCGCGATGTTTTACGTGTGACGTTTGTGGGGCGTCGTTCAAGTTACCAGCAGGTTtatacaaacataaaaaaattcacaCCACCGTTTCGGAAGAGTCAAACACGTACAAGTGCACTATATGCAGGAGACGTTTTTCCACCGAGGAAACACTGAAGCAACATAAAGCGTCTCATCCGCATACGGAACCGCAGTATTTCGGTTGCGAAACCTGCGGCTTATTGTGTGCTACCCAATATAATCTCGAGGATCATCGGAGAACTCACACCGGTGAGAAACCGTTCAAATGTCCCATTTGCGAGAAAGGCTTTTCACGGAGTAACTATCTCGCGCGACATGTGCGCACTCACGAAACAAAGGCAAGACTAATTATCTCTATTGATTTGGTTTAA
Protein Sequence
MLSHSDERQFQCDICPSTFKSQDALNKHKKVHLRGLEMNPFDVAHGSKDPHSHVDILESNYTEDGKHTDELLVKRKNCSKSFRTIAKQESHKPIHPREPCFKSEICNQSFALSGKLKPMQYQDVKQLFKCDICGKSFNSSSILYVHKKIHGSVKHTAKANFHCELCGEDFLFKSHLANHLKVHSADGPHKCLICEENFIFRSMLVEHMDSHSGEHRFQCDICTSTYKYQSTLNKHKQKHVEVTPPDVDSEDPHKCGVCKKVFIGRDTLEEHKKIHHKKKLLDLKCQICDKQVKTSFLLKIHMRTHTGERPFECETCGKTFITSAILGKHRITKHSLEKRFKCDVCAKDFHLKGQLTTHLSVHSTDRPHQCTVCGKDFKTKYSLQKHGHSHSDDSFQCDICGLSYKTPISLLSVHLKTHSTERAHECLVCGTRFRYRSKLARHMHTHSEARCFTCDVCGASFKLPQGLRVHRKIHTTVLKESNMHKCTICRRRFSTEETLKQHKASHPHTEPPHFVCETCGLVCSTKSNLKYHQKIHTAERPFACETCGKAFRRSYNLNRHITVHHEKPLKKNFRCELCGEGFRLRTHLWRHLEVHREKSPHENGPHTTEKTFECKICGENFPLYTQLSVHLKTHSTERAHECLVCGTRFRFRSKLARHMHTHGEARCFVCDVCGASFKLPGSLSKHKKIHITVLEESATHKCTICRRRFSTEHTLKQHEASNPHTEPQPFDCEICGLVCTTQYNLEYHRKTHTGEKPFKCETCGKAFSRSYDLNRHMTVRHEKRLEKNFRCELCGKAFRLRIYLLRHLQLHQEERPHKNGPHTTEKKFKCEICGKNFPLYTQLGVHLKTHSTERAHECLVCGMRFRWPSKLEQHMLTHSEARCFTCDVCGASFKLPAGLYKHKKIHTTVSEESNTYKCTICRRRFSTEETLKQHKASHPHTEPQYFGCETCGLLCATQYNLEDHRRTHTGEKPFKCPICEKGFSRSNYLARHVRTHETKARLIISIDLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-