Wsmi002552.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
SCRT1
Assembly
GCA_029784165.1
Location
CM056644.1:27976939-27983813[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.00033 0.036 16.2 0.3 1 23 111 133 111 133 0.99
2 44 0.0003 0.033 16.3 0.0 1 23 149 171 149 171 0.97
3 44 2.6e-07 2.8e-05 26.0 2.6 1 23 177 199 177 199 0.98
4 44 0.0031 0.34 13.1 1.4 1 23 205 227 205 227 0.98
5 44 0.00012 0.013 17.7 3.7 1 23 233 255 233 255 0.99
6 44 4.4e-05 0.0048 19.0 0.1 1 23 261 283 261 283 0.98
7 44 1e-05 0.0011 21.0 0.7 1 23 289 311 289 311 0.98
8 44 6e-05 0.0066 18.5 0.9 1 23 317 339 317 339 0.99
9 44 6.5e-06 0.00071 21.6 1.8 1 23 345 367 345 367 0.99
10 44 0.00041 0.045 15.9 0.7 1 23 373 395 373 395 0.97
11 44 0.0013 0.14 14.3 1.3 1 23 405 427 405 427 0.98
12 44 0.0027 0.29 13.3 0.8 1 23 436 459 436 459 0.93
13 44 2.8e-05 0.0031 19.6 0.8 1 23 464 486 464 486 0.98
14 44 0.0034 0.37 13.0 0.7 2 23 490 511 489 511 0.97
15 44 0.29 32 6.9 1.2 2 23 569 590 568 590 0.88
16 44 0.0091 0.99 11.7 0.4 3 23 599 619 598 619 0.98
17 44 3.5e-05 0.0038 19.3 4.2 1 23 625 647 625 647 0.98
18 44 4e-05 0.0043 19.1 0.5 1 23 653 675 653 675 0.99
19 44 0.00077 0.084 15.1 4.2 1 23 681 703 681 703 0.98
20 44 5.7e-05 0.0062 18.6 0.4 1 23 709 731 709 731 0.98
21 44 0.0051 0.56 12.5 1.9 1 23 739 761 739 761 0.98
22 44 0.026 2.9 10.2 0.3 2 21 768 787 767 788 0.95
23 44 0.00053 0.058 15.6 0.3 2 23 795 816 794 816 0.95
24 44 5.1e-05 0.0056 18.8 1.7 1 23 823 845 823 845 0.98
25 44 1.5 1.6e+02 4.7 4.3 2 20 880 898 879 901 0.88
26 44 0.0004 0.044 15.9 0.7 1 23 907 929 907 929 0.98
27 44 0.00033 0.036 16.2 3.6 3 23 937 956 936 956 0.97
28 44 1.8e-05 0.002 20.2 0.6 1 23 962 984 962 984 0.97
29 44 0.00022 0.024 16.7 0.8 1 23 990 1012 990 1012 0.98
30 44 0.00022 0.025 16.7 1.6 1 23 1018 1040 1018 1040 0.97
31 44 0.012 1.4 11.3 0.4 1 23 1046 1068 1046 1068 0.98
32 44 0.00048 0.053 15.7 0.3 1 23 1076 1098 1076 1098 0.98
33 44 0.044 4.8 9.5 1.7 1 21 1104 1124 1104 1125 0.95
34 44 0.0025 0.27 13.4 1.6 1 23 1132 1154 1132 1154 0.98
35 44 0.00049 0.054 15.7 0.1 3 23 1190 1210 1188 1210 0.97
36 44 0.099 11 8.4 0.4 2 23 1217 1237 1216 1237 0.95
37 44 8e-06 0.00087 21.3 1.5 2 23 1244 1265 1243 1265 0.97
38 44 5.2e-06 0.00057 21.9 0.8 1 23 1271 1293 1271 1293 0.98
39 44 1 1.1e+02 5.3 1.6 1 20 1299 1318 1299 1321 0.93
40 44 0.00036 0.039 16.1 1.3 1 23 1327 1349 1327 1349 0.98
41 44 0.02 2.2 10.6 5.8 1 23 1357 1379 1357 1379 0.98
42 44 1.1e-05 0.0012 20.8 2.2 1 23 1412 1434 1412 1434 0.97
43 44 0.63 69 5.9 3.5 1 23 1441 1463 1441 1463 0.83
44 44 0.031 3.4 10.0 1.7 3 23 1469 1490 1467 1490 0.95

Sequence Information

Coding Sequence
ATGGAGCAACCCGTGAGGGTAAAAACGGAACATATACCTATGGTAAAGTTGGAAACAAATATTTCAACGATAAAGGTAGAGGAAGCCATAATAGATGATCCTCTGGAAGAAGAAAACCGGCGTTTGGATGACGTGACAATTACTGCCCCACTGCTCAGCGGTCCAAGTGTTGTGAAGCTAGAACCCGCGGTTGATGTCCTCGCTGACGACGCCAATAAGTCCGGAACGTGTGGAACAGCAGCTTCCAGCTCCAgTAAAACAGATTTTCCGCTGGCCCAATTGGTGCCAACAGAGAGCGATTTATCCCTTGCTAAAAACCAAACCGCTGATTACAAATGCGTCATATGCGACAAACAACTTTCCGGGACAGGATATCTAGAGTTGCATATGCGTACGCACACTGGTGGTGGTCCCAAGCGGAAggtagaaaaggccaaaaagctTTACCAATGTGACATTTGCGGCAAGGAGGTAACCAGGAAAAGCGGTGCCGAACGGCATGCGCTGGTTCATTCCGGAGAACGGCCACACAAATGCAGCGTCTGCGGAAAAACGTTCTCCGGCAAATATTACCTTCAGGCCCATATGCGAATGCACAACGGTGAACAAAAGCACAAATGCGAGACTTGTGGCGAGGGATTCTTCGCGAGGAAATCCCTTGAACAGCACATATATACCCACACGGGCGAGCGGCCCTACAAGTGCGAAACGTGTAACAAATCGTTCAAGCAAGAATTCTACTATAAGTTACACGTCCGTATGCATGCTGGAGACGCGTTGTACAGGTGTGATGTTTGTGGCAAAGCGTTCACCGGTAAGAGTCCTTTGGAGATTCACAAATTAAGTCACACCGGCGAAAGGCCTTATAAATGTGATATTTGTGGGAAGGATTACACTCGCGAGGATACACTAAAGTACCATGTACGTCTGCATTCAAGCGAAGACGTCTTTAAATGCGATGTTTGTGGCAAAGGATTTCAaataagcagacagtatgaaAGGCATATCAAAACTCACTCCCAAGATCGGCCCTTCAAGTGTGAGTTTTGTGGAAAAGGCTTTCGTGACAGTTATTTACTTGTTTATCACAGACGCACTCACACCGGAGAACGACCCCATAAATGTGAGAACTGTGGTAAAGGGTTCATCACGGCCGATCGGCTTAGAATGCATAAAGCGGTTCACGATGTAGAGCTGCCCGGTGAAAAACCGTACAAATGTCTAGTTTGCAAAGCCCAATTCACGCTGAAGAGTAACCTTCAAACGCACGAAAAATTACACCTTGCGGATGAGGATGGACGAAGCTACCGGTGCTACATATGTGGTCAGCAGTGTCCTACCCAAGAGGCCCTTAAGCAGCACCGCGCAGCCACGCATACCGATCGACCGTATAAGTGCGACACCTGCGGTAAAACCTTCGTCCAGCAGGGAATACTGAGGAAACATCTGTTACGCCATACTGCACAGAAATGTCCGCTCTGCGATCTCTTGTGTGCTTCCGCGGACAGTTTGAAACAGCACATGAAGGAGCACACCGGCAAAAGGCGGAAAAAGCAATCAGTCAAGCGGGTGGCGAACGATGCGGTCGATGTGAAACCATTCCTACCGGTTGGTAGCCATCAAAGTACGACGATCTGTTCAGCGGAGGACAACGATGTTAAAGCATGGCCATTAGAGCTACCGAAAGCCAACGAACCGAAGAAGCAGTGCGACATATGCGGCAAGTTCTATTCGGACGATCACTATTTCGCTTTTCACTTGGCCTCACACGCTGGGCAGGTACAGGGGAACATTTGCGAGATTTGCGACAAAGGGTTCCCCTGCAAAAGTGTTCTTGATGCGCACATGCGATCCCACACCGGCAAGCGGCCGTTTCAGTGTGATATATGTAACAAAAAATTCAGCAGAGCAAACTGCTTGAAGAAGCATAGAGCGAGTCACACAGAGGAGAAGAACTTCAAATGTATGATATGTGACAAAGAATTTTTCATCGAAGCACAATTAGTAAGACACATGAGAACGCATACCTCGGATCGTCCGTTTAAGTGCACAGTTTGCGGAAAAGGTTTCCAGCACAGCTATTTGGTTACAAACCATATGCTTCATCACAGTGAATCGCGAACGTTCACATGTGACGTTTGCGGATCATCGTTTAAGTCCGCCAGTGCTCTTGGCTCGCACAGAAGAAAACATACGAGCAGTGGGCAGATTATGTTTAAATGCGACAAGTGCGATGCGCAGTTTACTACCCGTGGTAGTCTTACTTTTCATCGCAAAGTTCACTTGGAGGAACAGTCAGTCAAATGTTTTCATTGTGAAATAGAATTTCCCTCATCGGAGAGCCTACATGCACACGTACGTGACCTGCAAAGTAATCCCCTACGGTGTTTGGTATGTGGGGAAACGTTCCGCTTCAAAAGAAAACTGCGGGCTCATGTAGCTGTTCACGACAGTGAGGAAAAACCATACCAATGTGCGATCTGCAACTGTAGATTCCAAAGGGCTAGTAATCTTAAAATTCACGTCAAAATTCACTACGGTGAGCGTTCGCACGAGTGCGAACTCTATGCAGGAAATTTGAGGACTGAAACTGCGATTGACGAAGGTGGTCCGAGTGGCAGCAGCGGAGCAGCGATCCACTGTGACATTTGCGGCAATAACTATAAGAGCAGGAGAACATTCCGCAAACATTGCGAAATTCATAAACGAACTCATCGGTACCGGTGTGACATTTGCAACAAAGATTACTCAGCGGAGGAAACGTTGACGCGTCATAAAAAAATTCACACCAGCAAGCAGGACAAGCACTGTAATATTTGTGGGAAGTCTTTCACCACCAATAACCTGGCGAGGCACAAAAGGACCCACAGCGCTGAGCGACTTTTCGAGTGTGAAATTTGTGGTAAAAGTTTCAAAACTGTCTACACATTGGAGTACCACAAGTTGGTCCATACAACCGACAAACAGTTCAAATGTGACTTATGTGATAGGGCTTTCTTCAGGAAAATACTACTGATACAGCATGGAAAAACACACAACCCGGAGCGTCCGTATAAATGCCTGatttgtggaaaaggatttgTATTTAAGCAATTGCTTGCAAACCACATGTACCATCACAGCAACGAGCGACCGTTCGTGTGCGACATCTGTGGCTCATCGTACAAGTCCGGTCCCGATCTGCATGTTCACAAAAAAATCCACACGTACCTCGAGCCGAAACCGTTCAAGTGCGATATGTGCGATGCAAAATATGCCTACGAGGGTAATCTGCGGGCTCATAAAAAGGTACACTCGGAAGAACGACCGTACAAATGTAATGATTGTAAGTCGGAATTTGGCTCGCACGAGAATTTAGCAGAACATCTGTGTCAGATGCGCAAAGATCGACCTTACAAGTGTACGATTTGTGAGAAAGCTTTTCTCACGGATAGACATCTGCAGACGCATCAGATCGTGCACAACGATGAGCAACCATTTCAATGCTCGATCTGCGAGCGACGCGATGCGGATGAATCGAAGACGGAGGAAGCTGTAGACGGTCGTGCTCGTAAGCCAAGGTACGGCTGTGAGATTTGCGGAAGGGAATACGCACGTAAGAAAGCGCTATACAGACATCTTGATGTTCATTCTACCGAAAAAAGGCTGCAGTGTGATATTTGCGGAAAGTACTTGGTCAACAAAAACATGGCGAGGCACAAAAGAATACACAGTGAGAAACGGTTATTGGAGTGCGAAATATGTAGCAAAACCTTCTCATCGAAAAGCAAACTGGAAAGCCATAAAAATACTCACACGAAAGAAAAACCATTCGAATGTGAAGTATGTGGAAAAGTTTATTTCAGAAAGGAACACCTAGTGGCTCATGTAAAAACTCATAACCCGGAACGTCCGCATGAATGCTCTACATGCGGGAGAGGGTTCCTAATTTTACAGCAACTAGAGAGACACATGGCTTGTCACAAGACCGAGCGACCGTTTAAGTGCGACGTCTGTGGCTTATCGTACAAAGCAAAAGGTAATCTGTACACTCACAAGAAGAGACACGCGAGTCCCGACCGAAAACGATTCAAGTGCGATGAATGCGGTTTTAGATATCAACATCGATGTAGTCTCAAGGTTCACCTGGAGAAACACTTGAAAGAACGACAATTCGAATGTATTCATTGTAAAGAAGAATTTCTTTCACGTGATAGTCGCAATCACCACAGTCGAACGTGCAAGGATCGACCATTCAATTGTCCGACATGTGGGAAAGCTTTTATGTCCAAGAGAAACCTTCAACATCATGCCAAAATGCACAGTGATTCTAAATTCGTGCACCCGTGTTCGATCTGCGATAAAAGCTTCAAGTGGGAACATACTCTTGCTTGTCACATGGAACTGCACACTGGTTCGTTTGGGTGCGAATTTTGCGATCGTCGCTTCCGGCGGAAGAATGAAGCAGCTAAGCATTTTAATCGTTACCATAAGCAGGGGCAACAACTCTCGATAGCCGAGCCGACTTTGAACTAA
Protein Sequence
MEQPVRVKTEHIPMVKLETNISTIKVEEAIIDDPLEEENRRLDDVTITAPLLSGPSVVKLEPAVDVLADDANKSGTCGTAASSSSKTDFPLAQLVPTESDLSLAKNQTADYKCVICDKQLSGTGYLELHMRTHTGGGPKRKVEKAKKLYQCDICGKEVTRKSGAERHALVHSGERPHKCSVCGKTFSGKYYLQAHMRMHNGEQKHKCETCGEGFFARKSLEQHIYTHTGERPYKCETCNKSFKQEFYYKLHVRMHAGDALYRCDVCGKAFTGKSPLEIHKLSHTGERPYKCDICGKDYTREDTLKYHVRLHSSEDVFKCDVCGKGFQISRQYERHIKTHSQDRPFKCEFCGKGFRDSYLLVYHRRTHTGERPHKCENCGKGFITADRLRMHKAVHDVELPGEKPYKCLVCKAQFTLKSNLQTHEKLHLADEDGRSYRCYICGQQCPTQEALKQHRAATHTDRPYKCDTCGKTFVQQGILRKHLLRHTAQKCPLCDLLCASADSLKQHMKEHTGKRRKKQSVKRVANDAVDVKPFLPVGSHQSTTICSAEDNDVKAWPLELPKANEPKKQCDICGKFYSDDHYFAFHLASHAGQVQGNICEICDKGFPCKSVLDAHMRSHTGKRPFQCDICNKKFSRANCLKKHRASHTEEKNFKCMICDKEFFIEAQLVRHMRTHTSDRPFKCTVCGKGFQHSYLVTNHMLHHSESRTFTCDVCGSSFKSASALGSHRRKHTSSGQIMFKCDKCDAQFTTRGSLTFHRKVHLEEQSVKCFHCEIEFPSSESLHAHVRDLQSNPLRCLVCGETFRFKRKLRAHVAVHDSEEKPYQCAICNCRFQRASNLKIHVKIHYGERSHECELYAGNLRTETAIDEGGPSGSSGAAIHCDICGNNYKSRRTFRKHCEIHKRTHRYRCDICNKDYSAEETLTRHKKIHTSKQDKHCNICGKSFTTNNLARHKRTHSAERLFECEICGKSFKTVYTLEYHKLVHTTDKQFKCDLCDRAFFRKILLIQHGKTHNPERPYKCLICGKGFVFKQLLANHMYHHSNERPFVCDICGSSYKSGPDLHVHKKIHTYLEPKPFKCDMCDAKYAYEGNLRAHKKVHSEERPYKCNDCKSEFGSHENLAEHLCQMRKDRPYKCTICEKAFLTDRHLQTHQIVHNDEQPFQCSICERRDADESKTEEAVDGRARKPRYGCEICGREYARKKALYRHLDVHSTEKRLQCDICGKYLVNKNMARHKRIHSEKRLLECEICSKTFSSKSKLESHKNTHTKEKPFECEVCGKVYFRKEHLVAHVKTHNPERPHECSTCGRGFLILQQLERHMACHKTERPFKCDVCGLSYKAKGNLYTHKKRHASPDRKRFKCDECGFRYQHRCSLKVHLEKHLKERQFECIHCKEEFLSRDSRNHHSRTCKDRPFNCPTCGKAFMSKRNLQHHAKMHSDSKFVHPCSICDKSFKWEHTLACHMELHTGSFGCEFCDRRFRRKNEAAKHFNRYHKQGQQLSIAEPTLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-