Wsmi054380.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wyeomyia smithii
Gene Symbol
-
Assembly
GCA_029784165.1
Location
CM056646.1:256034104-256049861[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.00018 0.02 17.0 4.5 3 23 38 58 37 58 0.97
2 40 0.0025 0.27 13.4 2.7 1 23 64 86 64 86 0.98
3 40 3.6e-05 0.0039 19.2 1.1 1 23 92 114 92 114 0.96
4 40 0.00024 0.026 16.6 6.0 1 23 131 153 131 153 0.96
5 40 3.9e-05 0.0043 19.1 1.2 1 23 159 181 159 181 0.98
6 40 0.00018 0.019 17.1 1.4 1 23 187 209 187 209 0.98
7 40 2.4e-06 0.00026 22.9 0.7 1 23 215 237 215 237 0.98
8 40 0.00027 0.03 16.5 0.1 1 21 243 263 243 264 0.95
9 40 0.0067 0.73 12.1 2.8 2 23 273 294 272 294 0.97
10 40 3.4e-05 0.0037 19.3 0.4 3 23 306 326 305 326 0.99
11 40 1.5e-05 0.0016 20.5 1.5 1 23 332 354 332 354 0.99
12 40 0.0043 0.47 12.7 1.2 1 23 360 382 360 382 0.95
13 40 3.4e-07 3.7e-05 25.6 1.0 1 23 399 421 399 421 0.96
14 40 5.5e-05 0.006 18.7 1.5 1 23 427 449 427 449 0.98
15 40 0.42 46 6.4 1.1 1 23 455 477 455 477 0.95
16 40 1.8e-05 0.002 20.2 0.4 1 23 483 505 483 505 0.99
17 40 0.0016 0.17 14.1 0.4 1 23 511 533 511 533 0.98
18 40 9.7e-05 0.011 17.9 2.2 1 23 540 562 540 562 0.98
19 40 1.7e-06 0.00019 23.4 2.6 1 23 568 590 568 590 0.98
20 40 6.3e-07 6.9e-05 24.8 0.1 3 23 598 618 596 618 0.98
21 40 3.4e-06 0.00037 22.5 0.6 1 23 624 646 624 646 0.99
22 40 4.7e-05 0.0051 18.9 0.6 3 23 703 723 702 723 0.99
23 40 0.86 94 5.5 2.1 1 14 729 742 729 751 0.75
24 40 0.00062 0.068 15.4 4.0 1 23 757 779 757 780 0.95
25 40 0.00053 0.058 15.6 0.3 3 23 798 818 796 818 0.97
26 40 0.0019 0.2 13.9 6.9 1 23 824 846 824 846 0.98
27 40 0.00017 0.019 17.1 0.9 1 23 852 874 852 874 0.97
28 40 4.1e-07 4.5e-05 25.4 0.4 1 23 880 902 880 902 0.98
29 40 7.9e-06 0.00086 21.3 2.5 1 22 908 929 908 929 0.96
30 40 3.3 3.6e+02 3.6 4.9 1 21 936 956 936 958 0.92
31 40 6.3e-07 6.8e-05 24.8 2.2 1 23 975 997 975 997 0.96
32 40 6.6e-06 0.00072 21.6 0.6 3 23 1005 1025 1003 1025 0.96
33 40 0.0027 0.3 13.3 2.7 1 23 1031 1053 1031 1053 0.97
34 40 1.9e-05 0.0021 20.1 0.3 1 23 1059 1081 1059 1081 0.99
35 40 5.8e-05 0.0063 18.6 1.3 1 23 1087 1109 1087 1109 0.97
36 40 8.8e-05 0.0096 18.0 2.4 1 23 1115 1137 1115 1137 0.99
37 40 6.3e-05 0.0068 18.5 3.9 1 23 1143 1165 1143 1165 0.97
38 40 0.00073 0.079 15.1 0.5 3 23 1173 1193 1171 1193 0.97
39 40 4e-05 0.0043 19.1 0.3 1 23 1199 1221 1199 1221 0.98
40 40 0.02 2.1 10.6 0.1 1 23 1227 1249 1227 1249 0.97

Sequence Information

Coding Sequence
ATGAATGCCACCCACACAACGACAATGGAAGATTCAAACCAACTAACCGGAGTTTCCGATCGACCCAATGAAGCCATTCAGAACGATCCGGCTAGCAAAAAATCTCACGGCTGCTCAATCTGTGGTAAATGTTTCAGATTTAAAAGTCACCTAACAGAACACTTTCTCATTCATACCGGAGAAAAACCCTTCAAATGTGACTACTGTGGAATGCTCTGCAGGACTGAACGCAGTCTTAAAGTACATGTGCAACGACATACCGGTGAGCGGCCACATGTTTGCGGAGAGTGTGGTAAAGGATTCTTTCGCAAAGACCAATTAACGAACCATGAGAAATGGCACGATAAACCCAATCAGACCACCGAAAAAGACCTGTCTAGCATAAAACTTCACGATTGCGATATCTGCGGCAAAAGTTTTAGATGTAAAAGTCACCTCATGGTACACGTCCGCACTCATACGGGAGAAAAACCCTTTGAATGTGACCACTGTGGAATGAAGTTCGTAGATAACAGCAGGCTTAATATACATGTGCGACAGCACACCGGCGAGCGGCCATATATTTGCGAGGAGTGCGGTAAAGGGTTTAACTTCAGGAGCCAAATAACGACCCACAAGAAAAGGCACATCGACAAAAAACCTTTCAAGTGCGATGTGTGTGGCAAAGGGTTTTCACATCAATCTGCACTCGCAAACCACAAACTTATTCATACAAATCGAAAAGAGTACGAATGTGACCTCTGTGGTAAACGATTCAATATCAAGAGTGGTTTAATCAAGCACAGTCGTGTACAAGCCGGAGAAAGATCGGAGTCCAAATGCGATTTGTGTGAGAAATCGTTTACAACAAGCTGCGCGGCAAAACAGCATCGACAGATCCATACCGATTTAAATCAACTACCCGAAGCTCACGGTTGCTCTACCTGTGGTGAAAGCTTCAGATTTAAAAGTTACCTAATAGAACACCTTCGCATTCATACCGGAGGAGACCCCTTCAAATGTGACTACTGTGGATTGCTCTTCAAGACTGAACGTAATCTTAAAGTACATGTACGAAAGCATACCGGTGAGCGGCCACATGTTTGCGGAGAGTGCGGTAAAGGATTCCTCCGCAAGTACCTATTAACAAACCATAATAAATGGCACGATCGACTCAATCAGGCCACCCAAAATAATCTATCTAGTAAAAAAACCCACGATTGCGATATCTGCGGCAAAAGCTTCAAAAGAAAAGGTTCCCTAACGGTACACGTCCGCGTTCATACGGGAGAGAAACCCTTTGAATGTGACCACTGTGGAATGAAGTTCGTAGAGAGCAGCAAACTTAAAATACATGTGCGACAGCACACCGGCGAGCGGCCATATATCTGCGAGCAATGTGGTGAAGGATTCATCTGTAAGAACCGTTTAACGACCCATGAAAAATGGCACATCGACAAAAAACCTTTCAAATGCGATGTGTGTGGCAAAGGATTATCACATCAATCCGCACTCATAATCCACAAACGTATTCACACAAATCGAAAAGATTTCGAATGTGACCTCTGcggtaaacttttcaattttaagAGGGGTTTAATTCTGCACAGTCGTGTACACACCGGAAAAGGATCGGAGTTCAAATGCGATTTGTGTGAGAAATCGTTTACAACCAGCTACTCGGCTAATCGGCATCGACAGCTCCATACCAGTGAGAATTTACACAAATGCGATGAATGCGACAAACAATTTGTTTCTAGCAGCAATTTAGCCCAACATAAACGAACTCACACCGGAGAACGGCCGTACGGGTGCCCAATCTGCGGTAAGATGTTTACCAAAGAAGCCAGTTTGACGCGTCACATACGCATCCACACGGGAGATAAACCATACGAATGTGACATCTGTGGAAAGAAATTCACTGATAACAATGCGATGAAAATGCATCGACGCATTCATACCGGCGAGAAACCATATCAGTGCAAGAAAATTCGACGATCCAAAAACAATTACCTCATGAGTGCCACGTACACAATTGCAATGGAAGATTTAAACCTACAACCCGAAGCTTCCGATCAATCCAATAAAGCCGTTGAGAATGATCCGGCTAGTGAAAAACCTCACGGTTGCGATATCTGTGGTAAAAGCTACAAATTGAAAGGTCACCTTACGGAACATGTTCGCATTCATACCGGAGAGAAACCTTTTAAATGTGAATACTGCGGAATGCTCTTCAGGACTAGCACCATTCATAGAACACATGTACAACGTCATACCGGTGAGCGGCCACATGTTTGCGGAGAGTGTGGTAAAGGATTCTTCAGCAAAAACCTATTAACGAACCATAAAAATAGGCACCACCGACCTAATCAGGCCACTGAAAATGATCCGTCTAGCGAAAACCCTTACGGTTGCGATATCTGCGGCAAAGGCTTCGAATCAAAATTTTTCCTCACGGTACACGTCCGCTTTCATACCGGGGAAAAACCCTTCAAATGTGACCACTGCGGAAAACTTTTCAGGACTAGCAACAATTGTAGAATACATATGCGACAGCACACCGGCGAGCGGCCTTTTGTTTGCGAGAAGTGCGGTaaacgattcatcagcgggaatcAATTAACGACCCATAAGAAATGGCACATCGATAAAACACCTTTCAAGTGCGATATATGCGGCAAAAGCTTccaagtgaaaagtaacctcacGGTACACGCCCGCGTTCATACGGGAGAAAAGCCCTTCAAATGTGACTACTGTGGAAAGCTCTTCAAACATAGCAGCAATCTTAAATTACATGTGCGAAAACAAATCGGTGATCGGCCACATGTTTGCGGAGAGTGCGGTAGAGGATTCATCTGCAGTAACCAATTGAAGGACCATACAAAATGTCACGATCATCTCAATCAGGCCACCGAAAATAATCTGACTAGTAAAAAACTCCACGATTGCAGTATCTGCGGTAGAAgcttcaaaacaaaaagtaGCCTCACGTCACACGTCCGCGTTCATACGGGAGAGAAACGCTCTAACTGTGACTACTGTGGAAAGAAGTTCGCAGATAACAGCAAGCTTACAATACATGTGCGACAGCACACCGGCGAGCGGCCATATATTTGCGAGGAGTGCGGTAAAGGATTCATCTGCAGGAGCCATTTAACGATCCATAAGAAATGGCACATCGACAAAAAACCTTTCAAGTGCGATGTGTGTGGCAATGGATTTTCATACCAATCTGCACTCATAAATCACAAACGTATTCACTCAAATCTAAAAGAGTACGAATGTGACCTCTGCGGCAAGCGATTCAATAATCAGAATGGTTTAATTCAGCACAAACACGTGCACGCCGGAAATAAACCGTTCAAATGCGATTTGTGTGATAAATCGTTCATCACACGCTACTCAGCTAAACTGCACCGAAAGACCCATACCGGGGAGAAATCACACTGCTGCGATGAATGCGATAAACAATTCATTTCCAGCAGTGCTTTAACCATCCATAAACGAACTCACACTGGAGAACGACCGTACGGGTGCCAAATCTGCGGTAAGATGTTGACCGGAAGTAACAGTTTGAATCGTCACACACGCCTCCACACGGGAGAGAGACCGTACAAATGTGACATCTGTGGAGAGAAGTTTATTGACAGCTATGCAATAAAAAAGCACCGACTCATTCATACAGGCGAGAAGCCATATCAGTGCGAGATATGTGGAAAAGAACTCCTCTCCAGTAACGACCTCGCGAACCACAGGTTACTTCATGATAAAAAAGATACACAGCAACTTGCATTGCACAACGTTGATCAAAGCTGCCTTCAAAGTTCTCTACCAGATTCTGATCTGCCAGATCGAAAGGGCTTCACGCAAGCATGTGCTTCTTCGGATTATACCTTTACTCTTCTGTAG
Protein Sequence
MNATHTTTMEDSNQLTGVSDRPNEAIQNDPASKKSHGCSICGKCFRFKSHLTEHFLIHTGEKPFKCDYCGMLCRTERSLKVHVQRHTGERPHVCGECGKGFFRKDQLTNHEKWHDKPNQTTEKDLSSIKLHDCDICGKSFRCKSHLMVHVRTHTGEKPFECDHCGMKFVDNSRLNIHVRQHTGERPYICEECGKGFNFRSQITTHKKRHIDKKPFKCDVCGKGFSHQSALANHKLIHTNRKEYECDLCGKRFNIKSGLIKHSRVQAGERSESKCDLCEKSFTTSCAAKQHRQIHTDLNQLPEAHGCSTCGESFRFKSYLIEHLRIHTGGDPFKCDYCGLLFKTERNLKVHVRKHTGERPHVCGECGKGFLRKYLLTNHNKWHDRLNQATQNNLSSKKTHDCDICGKSFKRKGSLTVHVRVHTGEKPFECDHCGMKFVESSKLKIHVRQHTGERPYICEQCGEGFICKNRLTTHEKWHIDKKPFKCDVCGKGLSHQSALIIHKRIHTNRKDFECDLCGKLFNFKRGLILHSRVHTGKGSEFKCDLCEKSFTTSYSANRHRQLHTSENLHKCDECDKQFVSSSNLAQHKRTHTGERPYGCPICGKMFTKEASLTRHIRIHTGDKPYECDICGKKFTDNNAMKMHRRIHTGEKPYQCKKIRRSKNNYLMSATYTIAMEDLNLQPEASDQSNKAVENDPASEKPHGCDICGKSYKLKGHLTEHVRIHTGEKPFKCEYCGMLFRTSTIHRTHVQRHTGERPHVCGECGKGFFSKNLLTNHKNRHHRPNQATENDPSSENPYGCDICGKGFESKFFLTVHVRFHTGEKPFKCDHCGKLFRTSNNCRIHMRQHTGERPFVCEKCGKRFISGNQLTTHKKWHIDKTPFKCDICGKSFQVKSNLTVHARVHTGEKPFKCDYCGKLFKHSSNLKLHVRKQIGDRPHVCGECGRGFICSNQLKDHTKCHDHLNQATENNLTSKKLHDCSICGRSFKTKSSLTSHVRVHTGEKRSNCDYCGKKFADNSKLTIHVRQHTGERPYICEECGKGFICRSHLTIHKKWHIDKKPFKCDVCGNGFSYQSALINHKRIHSNLKEYECDLCGKRFNNQNGLIQHKHVHAGNKPFKCDLCDKSFITRYSAKLHRKTHTGEKSHCCDECDKQFISSSALTIHKRTHTGERPYGCQICGKMLTGSNSLNRHTRLHTGERPYKCDICGEKFIDSYAIKKHRLIHTGEKPYQCEICGKELLSSNDLANHRLLHDKKDTQQLALHNVDQSCLQSSLPDSDLPDRKGFTQACASSDYTFTLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-